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Protein
Submitted name:

BHLH transcription factor

Gene

her12

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • brain development Source: ZFIN
  • Notch signaling pathway Source: ZFIN
  • regulation of transcription, DNA-templated Source: UniProtKB-UniRule
  • somitogenesis Source: ZFIN
  • transcription, DNA-templated Source: UniProtKB-UniRule

Keywordsi

Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
BHLH transcription factorImported
Submitted name:
Hairy-related 12Imported
Gene namesi
Name:her12Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 23

Organism-specific databases

ZFINiZDB-GENE-040824-5 her12

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiENSDARG00000032963

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000044079

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 77BHLHInterPro annotationAdd BLAST57
Domaini89 – 116OrangeInterPro annotationAdd BLAST28

Phylogenomic databases

eggNOGiENOG410INK0 Eukaryota
ENOG410YVSK LUCA
GeneTreeiENSGT00910000144201
HOVERGENiHBG005960
KOiK06055
OMAiSHCWRES
OrthoDBiEOG091G0SIJ
TreeFamiTF351373

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR003650 Orange_dom
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS51054 ORANGE, 1 hit

Sequencei

Sequence statusi: Complete.

Q6TA36-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPHSATLAS FDHLHFSDKE KIKLRKPIVE KMRRDRINTC IDQLKSLLEK
60 70 80 90 100
EFHSHDPSTK LEKADILEMT VSFLKQQIKQ QQQIPQRDFN EGYSHCWRES
110 120 130 140 150
VHFLSLHSNA GELQHLHSGP KTNSTMGSTP ATACSKLNTA ALQHPDSVRA

VWRPW
Length:155
Mass (Da):17,820
Last modified:July 5, 2004 - v1
Checksum:i36794CB20CFD950E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU062502 Genomic DNA No translation available.
AY426713 mRNA Translation: AAR24623.1
RefSeqiNP_991182.1, NM_205619.1
UniGeneiDr.29089

Genome annotation databases

EnsembliENSDART00000044080; ENSDARP00000044079; ENSDARG00000032963
GeneIDi402914
KEGGidre:402914

Similar proteinsi

Entry informationi

Entry nameiQ6TA36_DANRE
AccessioniPrimary (citable) accession number: Q6TA36
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: June 20, 2018
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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