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Entry version 98 (31 Jul 2019)
Sequence version 1 (05 Jul 2004)
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Protein

Protein TraL

Gene

traL

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Membrane protein involved in F pilin formation.UniRule annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processConjugationUniRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein TraLUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traLImported
Synonyms:traL_1Imported, traL_2Imported
ORF Names:AM446_28360Imported, AWG78_025135Imported, BHS81_31125Imported, BK248_25925Imported, BK375_25685Imported, BZL31_21885Imported, C5N07_24760Imported, CDL37_21460Imported, COD46_23850Imported, CQP61_02350Imported, CRT43_27850Imported, D0X26_00955Imported, D0X26_29545Imported, DNQ41_25295Imported, DU321_18430Imported, EAI52_21840Imported, ERL57_19960Imported, ExPECSC036_00121Imported, EXX53_20440Imported, HmCmsJML072_04715Imported, HmCmsJML074_01237Imported, NCTC13148_00182Imported, NCTC9775_00152Imported, pHK01_063Imported, pHN3A11_053Imported, SAMEA3485101_04681Imported, SAMEA3485113_05684Imported, U12A_C00046Imported, UN86_19635Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid NR1Imported
Plasmid p4_4.2Imported
Plasmid p51008369SK1_AImported
Plasmid p51008369sk1_aImported
Plasmid pC15-1aImported
Plasmid pCA08Imported
Plasmid pEK516Imported
Plasmid pFOS-HK151325Imported
Plasmid pH1519-76Imported
Plasmid pHK01Imported
Plasmid pHK08Imported
Plasmid pHK09Imported
Plasmid pHK23aImported
Plasmid pHN3A11Imported
Plasmid pO26-LImported
Plasmid pSS20EcIncFIIImported
Plasmid pTB-nb3Imported
Plasmid pU12A_CImported
Plasmid pXZImported
Plasmid pYHCCImported
Plasmid pZSH6-blaCTX-M-3Imported
Plasmid ptb-nb3Imported
Plasmid pu12a_cImported
Plasmid unnamed4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000184168 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000278449 Componenti: Unassembled WGS sequence
  • UP000262604 Componenti: Plasmid unnamed4
  • UP000217968 Componenti: Unassembled WGS sequence
  • UP000194908 Componenti: Unassembled WGS sequence
  • UP000251419 Componenti: Unassembled WGS sequence
  • UP000214591 Componenti: Unassembled WGS sequence
  • UP000033592 Componenti: Unassembled WGS sequence
  • UP000289384 Componenti: Unassembled WGS sequence
  • UP000303761 Componenti: Unassembled WGS sequence
  • UP000303869 Componenti: Unassembled WGS sequence
  • UP000255496 Componenti: Unassembled WGS sequence
  • UP000291865 Componenti: Plasmid pu12a_c
  • UP000267155 Componenti: Plasmid ptb-nb3
  • UP000193168 Componenti: Unassembled WGS sequence
  • UP000254255 Componenti: Unassembled WGS sequence
  • UP000280867 Componenti: Plasmid p4_4.2
  • UP000184355 Componenti: Unassembled WGS sequence
  • UP000238978 Componenti: Unassembled WGS sequence
  • UP000249874 Componenti: Plasmid p51008369sk1_a
  • UP000251293 Componenti: Unassembled WGS sequence
  • UP000272662 Componenti: Unassembled WGS sequence
  • UP000292666 Componenti: Unassembled WGS sequence
  • UP000076551 Componenti: Unassembled WGS sequence
  • UP000304480 Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei31 – 61HelicalSequence analysisAdd BLAST31

GO - Cellular componenti

Keywords - Cellular componenti

Cell outer membraneUniRule annotation, Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016382 Pilus_assmbly_TraL
IPR009838 T4SS_TraL

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07178 TraL, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF003259 Pilus_assembly_TraL, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02762 TraL_TIGR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q6SJ25-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGDENKLKK YRFPETLTNQ SRWFGLPLDE LIPAAICVGW GITTSKYLFG
60 70 80 90 100
IGAAVLVYFG IKKLKKGRGS SWLRDLIYWY MPTALLRGIF HNVPDSCFRQ

WIK
Length:103
Mass (Da):11,890
Last modified:July 5, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE1C427E08795B9DC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY458016 Genomic DNA Translation: AAR25082.1
DQ364638 Genomic DNA Translation: ABD60016.1
FJ449539 Genomic DNA Translation: ACL12451.1
EU935738 Genomic DNA Translation: ACQ41925.1
HM355591 Genomic DNA Translation: ADK71093.1
JN087528 Genomic DNA Translation: AEO51476.1
JN087529 Genomic DNA Translation: AEO51575.1
JQ432559 Genomic DNA Translation: AFI99229.1
JF927996 Genomic DNA Translation: AFM38944.1
JX627737 Genomic DNA Translation: AFV92819.1
JX997935 Genomic DNA Translation: AGE98087.1
KJ484631 Genomic DNA Translation: AIF78108.1
CP009233 Genomic DNA Translation: AKD26801.1
KR078259 Genomic DNA Translation: AKI06987.1
CP029974 Genomic DNA Translation: AWV13503.1
CP032262 Genomic DNA Translation: AXZ88951.1
CP033634 Genomic DNA Translation: AYW28405.1
CP023828 Genomic DNA Translation: AZH42414.1
BFIF01000004 Genomic DNA Translation: GCN35919.1
BFON01000117 Genomic DNA Translation: GCW70689.1
BFOO01000043 Genomic DNA Translation: GCW80991.1
JZDU01000102 Genomic DNA Translation: KJW28621.1
MOFD01000075 Genomic DNA Translation: OJK70865.1
MOKA01000108 Genomic DNA Translation: OJR11477.1
NAHY01000820 Genomic DNA Translation: ORJ58351.1
MUAB01000056 Genomic DNA Translation: OUK48085.1
NIIS01000073 Genomic DNA Translation: OXK49310.1
NWAO01000052 Genomic DNA Translation: PBR49962.1
PUJR01000045 Genomic DNA Translation: PQP06869.1
CP035470 Genomic DNA Translation: QAY42708.1
QVOP01000079 Genomic DNA Translation: RFT85398.1
QVOP01000001 Genomic DNA Translation: RFT90737.1
RDDG01000082 Genomic DNA Translation: RLX74785.1
RRVG01000025 Genomic DNA Translation: RRL44017.1
LVSP02000003 Genomic DNA Translation: RRO38021.1
SDDW01000022 Genomic DNA Translation: RXJ32596.1
SHIF01000033 Genomic DNA Translation: RZX79467.1
UDHK01000021 Genomic DNA Translation: SRA12276.1
UDIE01000145 Genomic DNA Translation: SRB30551.1
UFZP01000002 Genomic DNA Translation: STE78037.1
UGET01000002 Genomic DNA Translation: STL60580.1

NCBI Reference Sequences

More...
RefSeqi
NP_957601.1, NC_005327.1
WP_000012113.1, NZ_UWVK01000002.1
YP_001096469.1, NC_009133.1
YP_002456189.1, NC_011812.1
YP_003108227.1, NC_013121.1
YP_006952239.1, NC_019057.1
YP_006953323.1, NC_019071.1
YP_006953422.1, NC_019072.1
YP_006953949.1, NC_019090.1
YP_006954270.1, NC_019095.1
YP_006990761.1, NC_019424.1
YP_007447547.1, NC_020278.2
YP_009070968.1, NC_025177.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AOT35351; AOT35351; FORC31_p095
KJW28621; KJW28621; UN86_19635
KZJ54382; KZJ54382; AWG90_16675
KZJ56800; KZJ56800; AWG90_03435
ODH26322; ODH26322; A6803_24690

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
13905169
13906241
13906344
13906869
13906957
13982323
14612561
20493038
2716502
40044065
4924794
7256850
8319180

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|562.11480.peg.927

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY458016 Genomic DNA Translation: AAR25082.1
DQ364638 Genomic DNA Translation: ABD60016.1
FJ449539 Genomic DNA Translation: ACL12451.1
EU935738 Genomic DNA Translation: ACQ41925.1
HM355591 Genomic DNA Translation: ADK71093.1
JN087528 Genomic DNA Translation: AEO51476.1
JN087529 Genomic DNA Translation: AEO51575.1
JQ432559 Genomic DNA Translation: AFI99229.1
JF927996 Genomic DNA Translation: AFM38944.1
JX627737 Genomic DNA Translation: AFV92819.1
JX997935 Genomic DNA Translation: AGE98087.1
KJ484631 Genomic DNA Translation: AIF78108.1
CP009233 Genomic DNA Translation: AKD26801.1
KR078259 Genomic DNA Translation: AKI06987.1
CP029974 Genomic DNA Translation: AWV13503.1
CP032262 Genomic DNA Translation: AXZ88951.1
CP033634 Genomic DNA Translation: AYW28405.1
CP023828 Genomic DNA Translation: AZH42414.1
BFIF01000004 Genomic DNA Translation: GCN35919.1
BFON01000117 Genomic DNA Translation: GCW70689.1
BFOO01000043 Genomic DNA Translation: GCW80991.1
JZDU01000102 Genomic DNA Translation: KJW28621.1
MOFD01000075 Genomic DNA Translation: OJK70865.1
MOKA01000108 Genomic DNA Translation: OJR11477.1
NAHY01000820 Genomic DNA Translation: ORJ58351.1
MUAB01000056 Genomic DNA Translation: OUK48085.1
NIIS01000073 Genomic DNA Translation: OXK49310.1
NWAO01000052 Genomic DNA Translation: PBR49962.1
PUJR01000045 Genomic DNA Translation: PQP06869.1
CP035470 Genomic DNA Translation: QAY42708.1
QVOP01000079 Genomic DNA Translation: RFT85398.1
QVOP01000001 Genomic DNA Translation: RFT90737.1
RDDG01000082 Genomic DNA Translation: RLX74785.1
RRVG01000025 Genomic DNA Translation: RRL44017.1
LVSP02000003 Genomic DNA Translation: RRO38021.1
SDDW01000022 Genomic DNA Translation: RXJ32596.1
SHIF01000033 Genomic DNA Translation: RZX79467.1
UDHK01000021 Genomic DNA Translation: SRA12276.1
UDIE01000145 Genomic DNA Translation: SRB30551.1
UFZP01000002 Genomic DNA Translation: STE78037.1
UGET01000002 Genomic DNA Translation: STL60580.1
RefSeqiNP_957601.1, NC_005327.1
WP_000012113.1, NZ_UWVK01000002.1
YP_001096469.1, NC_009133.1
YP_002456189.1, NC_011812.1
YP_003108227.1, NC_013121.1
YP_006952239.1, NC_019057.1
YP_006953323.1, NC_019071.1
YP_006953422.1, NC_019072.1
YP_006953949.1, NC_019090.1
YP_006954270.1, NC_019095.1
YP_006990761.1, NC_019424.1
YP_007447547.1, NC_020278.2
YP_009070968.1, NC_025177.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAOT35351; AOT35351; FORC31_p095
KJW28621; KJW28621; UN86_19635
KZJ54382; KZJ54382; AWG90_16675
KZJ56800; KZJ56800; AWG90_03435
ODH26322; ODH26322; A6803_24690
GeneIDi13905169
13906241
13906344
13906869
13906957
13982323
14612561
20493038
2716502
40044065
4924794
7256850
8319180
PATRICifig|562.11480.peg.927

Family and domain databases

InterProiView protein in InterPro
IPR016382 Pilus_assmbly_TraL
IPR009838 T4SS_TraL
PfamiView protein in Pfam
PF07178 TraL, 1 hit
PIRSFiPIRSF003259 Pilus_assembly_TraL, 1 hit
TIGRFAMsiTIGR02762 TraL_TIGR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ6SJ25_ECOLX
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6SJ25
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: July 31, 2019
This is version 98 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported
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