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Protein

Protein YIF1B

Gene

Yif1b

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • ER to Golgi vesicle-mediated transport Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIF1B
Alternative name(s):
YIP1-interacting factor homolog B
Gene namesi
Name:Yif1b
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi735199 Yif1b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini9 – 153CytoplasmicSequence analysisAdd BLAST145
Transmembranei154 – 174HelicalSequence analysisAdd BLAST21
Topological domaini175 – 186ExtracellularSequence analysisAdd BLAST12
Transmembranei187 – 207HelicalSequence analysisAdd BLAST21
Topological domaini208 – 237CytoplasmicSequence analysisAdd BLAST30
Transmembranei238 – 258HelicalSequence analysisAdd BLAST21
Topological domaini259ExtracellularSequence analysis1

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003072601 – 259Protein YIF1BAdd BLAST259

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineBy similarity1
Modified residuei12PhosphothreonineBy similarity1
Modified residuei64PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PRIDEiQ6PEC3

Expressioni

Gene expression databases

BgeeiENSRNOG00000020616 Expressed in 9 organ(s), highest expression level in testis
ExpressionAtlasiQ6PEC3 baseline

Interactioni

Protein-protein interaction databases

IntActiQ6PEC3, 2 interactors
MINTiQ6PEC3

Family & Domainsi

Sequence similaritiesi

Belongs to the YIF1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00390000009423
HOGENOMiHOG000234333
HOVERGENiHBG053252
InParanoidiQ6PEC3
KOiK20362
PhylomeDBiQ6PEC3

Family and domain databases

InterProiView protein in InterPro
IPR005578 Yif1_fam
PANTHERiPTHR14083 PTHR14083, 2 hits
PfamiView protein in Pfam
PF03878 YIF1, 2 hits

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q6PEC3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MHATGLAAPA GTPRLRKWPS KRRVPVSQPG MADPHQFFDD TSSAPSRGYG
60 70 80 90 100
GQPSPGSLGY PTSSSEAAFL AAPMSNMAMA YGSSLAAQGK ELVDKNIDRF
110 120 130 140 150
IPVSKLKYYF AVDTVYVGKK LGLLVFPYLH QDWEVQYQQD TPVAPRFDIN
160 170 180 190 200
APDLYIPAMA FITYILVAGL ALGTQDRMIG GVLTGLLFGK IGYYLVLAWC
210 220 230 240 250
CVSIFVFMIR TLRLKILAQA AAEGVPVRGA RNQLRMYLTM AVAAAQPVLM

YWLTFHLVR
Length:259
Mass (Da):28,418
Last modified:October 23, 2007 - v2
Checksum:iC918AA2E90B9B204
GO
Isoform 2 (identifier: Q6PEC3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-19: MHATGLAAPAGTPRLRKWP → MPRPGRGRIAA

Note: No experimental confirmation available.
Show »
Length:251
Mass (Da):27,568
Checksum:i6FAFC4723D18266C
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
G3V9N6G3V9N6_RAT
Protein YIF1B
Yif1b LOC103689986
366Annotation score:
A0A0H2UHX7A0A0H2UHX7_RAT
Protein YIF1B
Yif1b LOC103689986
229Annotation score:

Sequence cautioni

The sequence AAH58153 differs from that shown. Reason: Erroneous initiation.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0286571 – 19MHATG…LRKWP → MPRPGRGRIAA in isoform 2. 1 PublicationAdd BLAST19

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA Translation: AAH58153.1 Different initiation.
CB797587 mRNA No translation available.
RefSeqiNP_001014810.1, NM_001014810.1
NP_942029.2, NM_198734.2
UniGeneiRn.154471

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616 [Q6PEC3-1]
GeneIDi292768
KEGGirno:292768
UCSCiRGD:735199 rat [Q6PEC3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA Translation: AAH58153.1 Different initiation.
CB797587 mRNA No translation available.
RefSeqiNP_001014810.1, NM_001014810.1
NP_942029.2, NM_198734.2
UniGeneiRn.154471

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6PEC3, 2 interactors
MINTiQ6PEC3

Proteomic databases

PRIDEiQ6PEC3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616 [Q6PEC3-1]
GeneIDi292768
KEGGirno:292768
UCSCiRGD:735199 rat [Q6PEC3-1]

Organism-specific databases

CTDi90522
RGDi735199 Yif1b

Phylogenomic databases

GeneTreeiENSGT00390000009423
HOGENOMiHOG000234333
HOVERGENiHBG053252
InParanoidiQ6PEC3
KOiK20362
PhylomeDBiQ6PEC3

Miscellaneous databases

PROiPR:Q6PEC3

Gene expression databases

BgeeiENSRNOG00000020616 Expressed in 9 organ(s), highest expression level in testis
ExpressionAtlasiQ6PEC3 baseline

Family and domain databases

InterProiView protein in InterPro
IPR005578 Yif1_fam
PANTHERiPTHR14083 PTHR14083, 2 hits
PfamiView protein in Pfam
PF03878 YIF1, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiYIF1B_RAT
AccessioniPrimary (citable) accession number: Q6PEC3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: October 23, 2007
Last modified: September 12, 2018
This is version 79 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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