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Protein

Leucine-rich PPR motif-containing protein, mitochondrial

Gene

Lrpprc

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May play a role in RNA metabolism in both nuclei and mitochondria. In the nucleus binds to HNRPA1-associated poly(A) mRNAs and is part of nmRNP complexes at late stages of mRNA maturation which are possibly associated with nuclear mRNA export. May bind mature mRNA in the nucleus outer membrane. In mitochondria binds to poly(A) mRNA. Plays a role in translation or stability of mitochondrially encoded cytochrome c oxidase (COX) subunits. May be involved in transcription regulation. Cooperates with PPARGC1A to regulate certain mitochondrially encoded genes and gluconeogenic genes and may regulate docking of PPARGC1A to transcription factors. Seems to be involved in the transcription regulation of the multidrug-related genes MDR1 and MVP. Part of a nuclear factor that binds to the invMED1 element of MDR1 and MVP gene promoters (By similarity). Binds single-stranded DNA.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, RNA-binding
Biological processmRNA transport, Transcription, Transcription regulation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Leucine-rich PPR motif-containing protein, mitochondrial
Alternative name(s):
130 kDa leucine-rich protein
Short name:
LRP 130
Short name:
mLRP130
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Lrpprc
Synonyms:Lrp130
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 17

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1919666 Lrpprc

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Membrane, Mitochondrion, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 59MitochondrionSequence analysisAdd BLAST59
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000029554660 – 1392Leucine-rich PPR motif-containing protein, mitochondrialAdd BLAST1333

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei151N6-acetyllysineCombined sources1
Modified residuei186N6-acetyllysineCombined sources1
Modified residuei225N6-acetyllysineCombined sources1
Modified residuei291N6-acetyllysineBy similarity1
Modified residuei462N6-acetyllysineCombined sources1
Modified residuei749N6-acetyllysineBy similarity1
Modified residuei1025PhosphoserineBy similarity1
Modified residuei1026PhosphoserineBy similarity1
Modified residuei1028PhosphoserineBy similarity1
Modified residuei1137PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q6PB66

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q6PB66

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q6PB66

PeptideAtlas

More...
PeptideAtlasi
Q6PB66

PRoteomics IDEntifications database

More...
PRIDEi
Q6PB66

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q6PB66

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q6PB66

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
Q6PB66

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Strongly expressed in heart, liver and kidney. Weakly expressed in brain, skeletal muscle and testes.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed at embryonic stages E7, E11, E15 and E17 with a slight increase of levels during development.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000024120 Expressed in 290 organ(s), highest expression level in embryo

CleanEx database of gene expression profiles

More...
CleanExi
MM_LRPPRC

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q6PB66 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q6PB66 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with CECR2, HEBP2, MAP1S and UXT (By similarity). Interacts with PPARGC1A (By similarity). Interacts with FOXO1. Component of mRNP complexes associated with HNRPA1 (By similarity).By similarity

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
215365, 4 interactors

Protein interaction database and analysis system

More...
IntActi
Q6PB66, 10 interactors

Molecular INTeraction database

More...
MINTi
Q6PB66

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000107927

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q6PB66

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q6PB66

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati125 – 159PPR 1Add BLAST35
Repeati160 – 194PPR 2Add BLAST35
Repeati195 – 229PPR 3Add BLAST35
Repeati230 – 264PPR 4Add BLAST35
Repeati265 – 299PPR 5Add BLAST35
Repeati300 – 334PPR 6Add BLAST35
Repeati402 – 436PPR 7Add BLAST35
Repeati437 – 471PPR 8Add BLAST35
Repeati677 – 708PPR 9Add BLAST32
Repeati709 – 745PPR 10Add BLAST37
Repeati746 – 783PPR 11Add BLAST38
Repeati784 – 820PPR 12Add BLAST37
Repeati821 – 856PPR 13Add BLAST36
Repeati953 – 987PPR 14Add BLAST35
Repeati1030 – 1064PPR 15Add BLAST35
Repeati1065 – 1101PPR 16Add BLAST37
Repeati1102 – 1136PPR 17Add BLAST35
Repeati1137 – 1175PPR 18Add BLAST39
Repeati1176 – 1210PPR 19Add BLAST35
Repeati1315 – 1349PPR 20Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni931 – 1050RNA-bindingAdd BLAST120

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4318 Eukaryota
ENOG410XSG9 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000016775

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000113350

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG097314

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q6PB66

KEGG Orthology (KO)

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KOi
K17964

Identification of Orthologs from Complete Genome Data

More...
OMAi
FFLRHCV

Database of Orthologous Groups

More...
OrthoDBi
EOG091G06CN

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q6PB66

TreeFam database of animal gene trees

More...
TreeFami
TF323626

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 3 hits

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR033490 LRP130
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR24015:SF945 PTHR24015:SF945, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01535 PPR, 1 hit
PF13812 PPR_3, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756 PPR, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375 PPR, 13 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q6PB66-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAALLRPARW LLGAAAAPRL PLSLRLPAGV PGRLSSVVRV AAVGSRPAAG
60 70 80 90 100
ERLSQARLYA IVAEKRDLQE EPAPVRKNSS QFDWALMRLD NSVRRTGRIT
110 120 130 140 150
KGLLQRVFES TCSSGSPGSN QALLLLRSCG SLLPELSLAE RTEFAHKIWD
160 170 180 190 200
KLQQLGVVYD VSHYNALLKV YLQNEYKFSP TDFLAKMEGA NIQPNRVTYQ
210 220 230 240 250
RLIAAYCNVG DIEGASKILG FMKTKDLPIT EAVFSALVTG HARAGDMENA
260 270 280 290 300
ENILTVMKQA GIEPGPDTYL ALLNAHAERG DIGQVRQILE KVEKSDHYFM
310 320 330 340 350
DRDFLQVIFS FSKAGYPQYV SEILEKITYE RRSIPDAMNL ILFLATEKLE
360 370 380 390 400
DTAFQVLLAL PLSKDESSDN FGSFFLRHCV TLDLPPEKLI DYCRRLRDAK
410 420 430 440 450
LHSSSLQFTL HCALQANRTA LAKAVMEALR EEGFPIRPHY FWPLLAGHQK
460 470 480 490 500
TKNVQGIIDI LKIMNKVGVD PDQETYINYV FPCFDSAQSV RAALQENECL
510 520 530 540 550
LASSTFAQAE VKNEAINGNL QNILSFLESN TLPFSFSSLR NSLILGFRRS
560 570 580 590 600
MNIDLWSKIT ELLYKDERYC SKPPGPAEAV GYFLYNLIDS MSDSEVQAKE
610 620 630 640 650
ERLRQYFHQL QEMNVKVPEN IYKGICNLLN TYHVPELIKD IKVLVDREKV
660 670 680 690 700
DSQKTSQVTS SDLESTLEKL KAEGQPVGSA LKQLLLLLCS EENMQKALEV
710 720 730 740 750
KAKYESDMVI GGYAALINLC CRHDNAEDAW NLKQEVDRLD ASAILDTAKY
760 770 780 790 800
VALVKVLGKH SRLQDAINIL KEMKEKDVVI KDATVLSFFH ILNGAALRGE
810 820 830 840 850
IETVKQLHEA IVTLGLAKPS SNISFPLVTV HLEKGDLPAA LEASIACHKK
860 870 880 890 900
YKVLPRIHDV LCKLVEKGET DLIQKAMDFV SQEQGEMTML YDLFFAFLQT
910 920 930 940 950
GNYKEAKKII ETPGIRARPT RLQWFCDRCI ASNQVEALEK LVELTEKLFE
960 970 980 990 1000
CDRDQMYYNL LKLYKISSDW QRADAAWTKM QEENIIPRER TLRLLAEILK
1010 1020 1030 1040 1050
TSNQEVPFDV PELWFGDDRP SLSPSSRSAG EDVTEKTLLS NCKLKKSKDA
1060 1070 1080 1090 1100
YNIFLKAEKQ NVVFSSETYS TLIGLLLSKD DFTQAMHVKD FAETHIKGFT
1110 1120 1130 1140 1150
LNDAANSLLI IRQVRRDYLK GALATLRAAL DLKQVPSQIA VTRLIQALAL
1160 1170 1180 1190 1200
KGDVESIEAI QRMVAGLDTI GLSKMVFINN IALAQMKNNK LDAAIENIEH
1210 1220 1230 1240 1250
LLASENQAIE PQYFGLSYLF RKVIEEQMEP ALEKLSIMSE RMANQFALYK
1260 1270 1280 1290 1300
PVTDLFLQLV DSGKVDEARA LLERCGAIAE QSSLLSVFCL RTSQKPKKAP
1310 1320 1330 1340 1350
VLKTLLELIP ELRDNDKVYS CSMKSYALDK DVASAKALYE YLTAKNLKLD
1360 1370 1380 1390
DLFLKRYAAL LKDVGEPVPF PEPPESFAFY IKQLKEARES PS
Length:1,392
Mass (Da):156,615
Last modified:July 24, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCC774240FCDBB2A6
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6V2A3F6V2A3_MOUSE
Leucine-rich PPR motif-containing p...
Lrpprc
142Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH59862 differs from that shown. Reason: Erroneous initiation.Curated
The sequence BAB29082 differs from that shown. Reason: Erroneous translation. CTG leucine codon is translated as initiator methionine.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti35S → F in BAB93528 (PubMed:12071956).Curated1
Sequence conflicti52R → L in BAB93528 (PubMed:12071956).Curated1
Sequence conflicti67D → V in BAB93528 (PubMed:12071956).Curated1
Sequence conflicti466K → E in BAB93528 (PubMed:12071956).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB027124 mRNA Translation: BAB93528.1 Sequence problems.
BC059862 mRNA Translation: AAH59862.1 Different initiation.
AK013955 mRNA Translation: BAB29082.2 Sequence problems.

The Consensus CDS (CCDS) project

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CCDSi
CCDS29003.2

NCBI Reference Sequences

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RefSeqi
NP_082509.2, NM_028233.2

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.217027

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000112308; ENSMUSP00000107927; ENSMUSG00000024120

Database of genes from NCBI RefSeq genomes

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GeneIDi
72416

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
mmu:72416

UCSC genome browser

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UCSCi
uc008dtc.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB027124 mRNA Translation: BAB93528.1 Sequence problems.
BC059862 mRNA Translation: AAH59862.1 Different initiation.
AK013955 mRNA Translation: BAB29082.2 Sequence problems.
CCDSiCCDS29003.2
RefSeqiNP_082509.2, NM_028233.2
UniGeneiMm.217027

3D structure databases

ProteinModelPortaliQ6PB66
SMRiQ6PB66
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi215365, 4 interactors
IntActiQ6PB66, 10 interactors
MINTiQ6PB66
STRINGi10090.ENSMUSP00000107927

PTM databases

iPTMnetiQ6PB66
PhosphoSitePlusiQ6PB66
SwissPalmiQ6PB66

Proteomic databases

EPDiQ6PB66
MaxQBiQ6PB66
PaxDbiQ6PB66
PeptideAtlasiQ6PB66
PRIDEiQ6PB66

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000112308; ENSMUSP00000107927; ENSMUSG00000024120
GeneIDi72416
KEGGimmu:72416
UCSCiuc008dtc.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
10128
MGIiMGI:1919666 Lrpprc

Phylogenomic databases

eggNOGiKOG4318 Eukaryota
ENOG410XSG9 LUCA
GeneTreeiENSGT00390000016775
HOGENOMiHOG000113350
HOVERGENiHBG097314
InParanoidiQ6PB66
KOiK17964
OMAiFFLRHCV
OrthoDBiEOG091G06CN
PhylomeDBiQ6PB66
TreeFamiTF323626

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
Lrpprc mouse

Protein Ontology

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PROi
PR:Q6PB66

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000024120 Expressed in 290 organ(s), highest expression level in embryo
CleanExiMM_LRPPRC
ExpressionAtlasiQ6PB66 baseline and differential
GenevisibleiQ6PB66 MM

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR033490 LRP130
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PANTHERiPTHR24015:SF945 PTHR24015:SF945, 2 hits
PfamiView protein in Pfam
PF01535 PPR, 1 hit
PF13812 PPR_3, 2 hits
TIGRFAMsiTIGR00756 PPR, 2 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLPPRC_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6PB66
Secondary accession number(s): Q8K4V0, Q9CRX4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: July 24, 2007
Last modified: November 7, 2018
This is version 128 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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