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Protein
Submitted name:

Msx1 protein

Gene

msx1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi171 – 230HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Msx1 proteinImported
Gene namesi
Name:msx1Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ6P620
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini169 – 229HomeoboxInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0492 Eukaryota
ENOG410YT2J LUCA
HOGENOMiHOG000231922
HOVERGENiHBG005205
OMAiCMAPSIA
OrthoDBiEOG091G0P1V

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PRINTSiPR00024 HOMEOBOX
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Fragment.

Q6P620-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
PRAQLYGSHS PAVTSQLGYL CMAPALLMAT YQPGVKVEES PSVNKMQTGL
60 70 80 90 100
KVALGEDKPK VPGILPFSVE ALMADRKPGR ERDLSSPTGS PLAGTSHSPR
110 120 130 140 150
VGSLAPGETP NSPISIGNRF PVGGIMKLPE EALVKPESPE RSSWIQSPRF
160 170 180 190 200
SPSPTRRMSP PACTLRKHKT NRKPRTPFTT SQLLALERKF RQKQYLSIAE
210 220 230 240 250
RAEFSSSLNL TETQVKIWFQ NRRAKAKRLQ EAELEKLKMA AKPMLPPAFG
260 270 280 290
ISFPLGTPVP TASLYGTSNP FQRPALPVSP MGLYTAHVGY SMYHLS
Length:296
Mass (Da):32,387
Last modified:July 5, 2004 - v1
Checksum:i4BD52E1A5626552D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC062514 mRNA Translation: AAH62514.1
UniGeneiStr.2153

Similar proteinsi

Entry informationi

Entry nameiQ6P620_XENTR
AccessioniPrimary (citable) accession number: Q6P620
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 28, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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