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Protein

Solute carrier family 25 member 40

Gene

slc25a40

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 25 member 40
Gene namesi
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-1003942 slc25a40

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 40Helical; Name=1Sequence analysisAdd BLAST21
Transmembranei104 – 124Helical; Name=2Sequence analysisAdd BLAST21
Transmembranei143 – 163Helical; Name=3Sequence analysisAdd BLAST21
Transmembranei200 – 221Helical; Name=4Sequence analysisAdd BLAST22
Transmembranei236 – 256Helical; Name=5Sequence analysisAdd BLAST21
Transmembranei299 – 319Helical; Name=6Sequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002918141 – 341Solute carrier family 25 member 40Add BLAST341

Proteomic databases

PaxDbiQ6P316

Expressioni

Gene expression databases

BgeeiENSXETG00000027655
ExpressionAtlasiQ6P316 baseline

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000063269

Structurei

3D structure databases

ProteinModelPortaliQ6P316
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati14 – 132Solcar 1Add BLAST119
Repeati140 – 224Solcar 2Add BLAST85
Repeati234 – 328Solcar 3Add BLAST95

Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0761 Eukaryota
ENOG410XQVP LUCA
GeneTreeiENSGT00790000123051
HOGENOMiHOG000214473
HOVERGENiHBG011439
InParanoidiQ6P316
KOiK15119

Family and domain databases

Gene3Di1.50.40.10, 1 hit
InterProiView protein in InterPro
IPR002067 Mit_carrier
IPR018108 Mitochondrial_sb/sol_carrier
IPR023395 Mt_carrier_dom_sf
PfamiView protein in Pfam
PF00153 Mito_carr, 3 hits
PRINTSiPR00926 MITOCARRIER
SUPFAMiSSF103506 SSF103506, 2 hits
PROSITEiView protein in PROSITE
PS50920 SOLCAR, 3 hits

Sequencei

Sequence statusi: Complete.

Q6P316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKNTEPVQE AINITPSQQM IASSMGALLT SFFVTPLDVV KIRLQAQSKP
60 70 80 90 100
FIKGKCFVYC NGLMDHLCLC TNGNGKAWYR APGHFRGTTD AFVQIIRNEG
110 120 130 140 150
IKSLWSGLPP TLVMAVPATV IYFTCYDQLR DILIRSMPER AEIASLVAGA
160 170 180 190 200
TARLWSATLI SPLELIRTKM QYRPLSYKEL RQCIQSSVAK DGWLALWKGW
210 220 230 240 250
GPTVLRDVPF SALYWHNYEL VKQSLCQRYN TLQPTFAISF TAGAVSGSIA
260 270 280 290 300
AIVTLPFDVV KTRRQVEVGE LEMFTYSQKR SSSTWKLMRA IVIENGFGGL
310 320 330 340
FAGLIPRLIK VAPACAIMIS TYEFGKSFFR KLNNERQLKS L
Length:341
Mass (Da):38,259
Last modified:July 5, 2004 - v1
Checksum:i85920139D4E78C35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC064218 mRNA Translation: AAH64218.1
BC075453 mRNA Translation: AAH75453.1
RefSeqiNP_989316.1, NM_203985.1
XP_012819921.1, XM_012964467.2
XP_017950087.1, XM_018094598.1
UniGeneiStr.1541

Genome annotation databases

EnsembliENSXETT00000057574; ENSXETP00000057574; ENSXETG00000027655
GeneIDi394941
KEGGixtr:394941

Similar proteinsi

Entry informationi

Entry nameiS2540_XENTR
AccessioniPrimary (citable) accession number: Q6P316
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: July 5, 2004
Last modified: November 22, 2017
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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