UniProtKB - Q6NNI3 (LSH1_ARATH)
Protein
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
Gene
LSH1
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development.1 Publication
GO - Molecular functioni
- DNA binding Source: UniProtKB-KW
GO - Biological processi
- mRNA transcription Source: UniProtKB
- multicellular organism development Source: UniProtKB-KW
- post-embryonic plant morphogenesis Source: UniProtKB
- response to blue light Source: TAIR
- response to far red light Source: TAIR
- response to light stimulus Source: TAIR
- response to red light Source: TAIR
- unidimensional cell growth Source: TAIR
Keywordsi
Molecular function | Developmental protein, DNA-binding |
Biological process | Transcription, Transcription regulation |
Names & Taxonomyi
Protein namesi | Recommended name: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1Alternative name(s): Protein ORGAN BOUNDARY 2 |
Gene namesi | Name:LSH1 Synonyms:OBO2 Ordered Locus Names:At5g28490 ORF Names:F24J2.30 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT5G28490 |
TAIRi | locus:2147494, AT5G28490 |
Subcellular locationi
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000425288 | 1 – 190 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1Add BLAST | 190 |
Proteomic databases
PaxDbi | Q6NNI3 |
PRIDEi | Q6NNI3 |
ProteomicsDBi | 238593 |
Expressioni
Tissue specificityi
Expressed in hypocotyls, shoot apices and lateral root primordia and, weakly, in vascular tissues.1 Publication
Gene expression databases
ExpressionAtlasi | Q6NNI3, baseline and differential |
Genevisiblei | Q6NNI3, AT |
Interactioni
Protein-protein interaction databases
BioGRIDi | 18214, 2 interactors |
IntActi | Q6NNI3, 2 interactors |
STRINGi | 3702.AT5G28490.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 25 – 152 | ALOGPROSITE-ProRule annotationAdd BLAST | 128 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 150 – 154 | Nuclear localization signalCurated | 5 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 158 – 179 | Gln-richAdd BLAST | 22 |
Sequence similaritiesi
Belongs to the plant homeotic and developmental regulators ALOG protein family.Curated
Phylogenomic databases
eggNOGi | ENOG502QSQJ, Eukaryota |
HOGENOMi | CLU_071168_1_1_1 |
InParanoidi | Q6NNI3 |
OMAi | MVQGTNF |
OrthoDBi | 1441744at2759 |
PhylomeDBi | Q6NNI3 |
Family and domain databases
InterProi | View protein in InterPro IPR040222, ALOG IPR006936, ALOG_dom |
PANTHERi | PTHR31165, PTHR31165, 1 hit |
Pfami | View protein in Pfam PF04852, DUF640, 1 hit |
PROSITEi | View protein in PROSITE PS51697, ALOG, 1 hit |
i Sequence
Sequence statusi: Complete.
Q6NNI3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL
60 70 80 90 100
PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
110 120 130 140 150
LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK
160 170 180 190
KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY319947 mRNA Translation: AAQ82901.1 AF262039 Genomic DNA No translation available. CP002688 Genomic DNA Translation: AED93805.1 BT010821 mRNA Translation: AAR24188.1 BT011304 mRNA Translation: AAR92340.1 |
RefSeqi | NP_198201.1, NM_122732.3 |
Genome annotation databases
EnsemblPlantsi | AT5G28490.1; AT5G28490.1; AT5G28490 |
GeneIDi | 832941 |
Gramenei | AT5G28490.1; AT5G28490.1; AT5G28490 |
KEGGi | ath:AT5G28490 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY319947 mRNA Translation: AAQ82901.1 AF262039 Genomic DNA No translation available. CP002688 Genomic DNA Translation: AED93805.1 BT010821 mRNA Translation: AAR24188.1 BT011304 mRNA Translation: AAR92340.1 |
RefSeqi | NP_198201.1, NM_122732.3 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 18214, 2 interactors |
IntActi | Q6NNI3, 2 interactors |
STRINGi | 3702.AT5G28490.1 |
Proteomic databases
PaxDbi | Q6NNI3 |
PRIDEi | Q6NNI3 |
ProteomicsDBi | 238593 |
Genome annotation databases
EnsemblPlantsi | AT5G28490.1; AT5G28490.1; AT5G28490 |
GeneIDi | 832941 |
Gramenei | AT5G28490.1; AT5G28490.1; AT5G28490 |
KEGGi | ath:AT5G28490 |
Organism-specific databases
Araporti | AT5G28490 |
TAIRi | locus:2147494, AT5G28490 |
Phylogenomic databases
eggNOGi | ENOG502QSQJ, Eukaryota |
HOGENOMi | CLU_071168_1_1_1 |
InParanoidi | Q6NNI3 |
OMAi | MVQGTNF |
OrthoDBi | 1441744at2759 |
PhylomeDBi | Q6NNI3 |
Miscellaneous databases
PROi | PR:Q6NNI3 |
Gene expression databases
ExpressionAtlasi | Q6NNI3, baseline and differential |
Genevisiblei | Q6NNI3, AT |
Family and domain databases
InterProi | View protein in InterPro IPR040222, ALOG IPR006936, ALOG_dom |
PANTHERi | PTHR31165, PTHR31165, 1 hit |
Pfami | View protein in Pfam PF04852, DUF640, 1 hit |
PROSITEi | View protein in PROSITE PS51697, ALOG, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | LSH1_ARATH | |
Accessioni | Q6NNI3Primary (citable) accession number: Q6NNI3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 19, 2014 |
Last sequence update: | July 5, 2004 | |
Last modified: | August 12, 2020 | |
This is version 87 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families