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Protein

ABC transporter D family member 2, chloroplastic

Gene

ABCC2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi464 – 471ATPPROSITE-ProRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT1G54350-MONOMER

Protein family/group databases

TCDBi3.A.1.203.8 the atp-binding cassette (abc) superfamily

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter D family member 2, chloroplastic (EC:3.6.3.-)
Short name:
ABC transporter ABCD.2
Short name:
AtABCD2
Gene namesi
Name:ABCC2
Synonyms:PMP1
Ordered Locus Names:At1g54350
ORF Names:F20D21.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G54350
TAIRilocus:2020138 AT1G54350

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei88 – 108HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei124 – 144HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei200 – 222HelicalPROSITE-ProRule annotationAdd BLAST23
Transmembranei237 – 257HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei326 – 346HelicalPROSITE-ProRule annotationAdd BLAST21

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 44Chloroplast1 PublicationAdd BLAST44
ChainiPRO_000037913645 – 706ABC transporter D family member 2, chloroplasticAdd BLAST662

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei45N-acetylserine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ6NLC1

PTM databases

iPTMnetiQ6NLC1

Expressioni

Gene expression databases

ExpressionAtlasiQ6NLC1 baseline and differential
GenevisibleiQ6NLC1 AT

Interactioni

Subunit structurei

Homodimer or heterodimer.Curated

Protein-protein interaction databases

BioGridi27101, 15 interactors
IntActiQ6NLC1, 15 interactors
STRINGi3702.AT1G54350.1

Structurei

3D structure databases

ProteinModelPortaliQ6NLC1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini88 – 372ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST285
Domaini430 – 697ABC transporterPROSITE-ProRule annotationAdd BLAST268

Sequence similaritiesi

Keywords - Domaini

Transit peptide, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0060 Eukaryota
COG4178 LUCA
HOGENOMiHOG000255119
OMAiSMMAYLI
OrthoDBiEOG09360102
PhylomeDBiQ6NLC1

Family and domain databases

Gene3Di1.20.1560.10, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF06472 ABC_membrane_2, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
SSF90123 SSF90123, 1 hit
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6NLC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILMITAPVC PPHLLLRHSS LLRHESSIGN FHRKKNPRFR TVSCSSLLPQ
60 70 80 90 100
PSVRPDKASE LKTLWKKFYK VASPYWFSED KDQARLRLAA VFALTLATTG
110 120 130 140 150
ISVGFNFLGR DFYNSLANKD QEQFTKQLFY YLCAFAGGIP FFVLRDYTKE
160 170 180 190 200
TLSLRWRSWM TKYYLQRYLK DQTFYKIQSQ SIIDNPDQRL VDDLSSFTGT
210 220 230 240 250
ALSFSLTLVN ATIDLISFSN ILFTIYPPLF LVLLLYSFGG TAISVFLGKG
260 270 280 290 300
LVNLNFLQEK KEADFRYSLV RVRENAESIA FYGGEQNEMQ LLLQRFRSAF
310 320 330 340 350
DNLTELLIAS RNLEFFTDGY RYLIQILPVA VVAPMYFSGK IEFGVINQSV
360 370 380 390 400
SAFNHILGDF SLVVYQFQAI SSFSAVIDRL GEFDDLLDNN IFRDPSDTVD
410 420 430 440 450
EIELTYQSEM NSSLLDTNGS IKSQPNQKRL EIEELTLQTP TNGTTLVHNL
460 470 480 490 500
SADVYDKDHL LIMGPSGSGK TSLLRAMAGL WRSGKGKITF YLDPEVDFTQ
510 520 530 540 550
EKSDTQENSG KRGDVLFLPQ RPYMVLGSLR QQLLYPTWSA TVEETTPGGS
560 570 580 590 600
NIDGSPPLLI REDGNEKPTT DDLMRTLEKV CLGHIADRFG GLDSIHEWSS
610 620 630 640 650
VLSLGEQQRL AFARLLLSQP KLALLDESTS ALDEANEAFL YQQIQSAGIT
660 670 680 690 700
YISIGHRRTL TKFHNKILQI STADPKSNER NWRIEDVDAQ DSLYGRLNQK

EVPSES
Length:706
Mass (Da):80,054
Last modified:July 5, 2004 - v1
Checksum:i4E6422F72A26F7FC
GO

Sequence cautioni

The sequence AAD25615 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005287 Genomic DNA Translation: AAD25615.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33083.1
BT012226 mRNA Translation: AAS76713.1
BT012413 mRNA Translation: AAS92329.1
PIRiB96585
RefSeqiNP_175837.2, NM_104313.4
UniGeneiAt.37230

Genome annotation databases

EnsemblPlantsiAT1G54350.1; AT1G54350.1; AT1G54350
GeneIDi841876
GrameneiAT1G54350.1; AT1G54350.1; AT1G54350
KEGGiath:AT1G54350

Similar proteinsi

Entry informationi

Entry nameiAB2D_ARATH
AccessioniPrimary (citable) accession number: Q6NLC1
Secondary accession number(s): Q9SLJ9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: July 5, 2004
Last modified: July 18, 2018
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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