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UniProtKB - Q6LJT0 (Q6LJT0_PHOPR)

Entry version 59 (07 Oct 2020)
Sequence version 1 (05 Jul 2004)
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Protein

LPD22 domain-containing protein

Gene

PBPRB0577

Organism
Photobacterium profundum (strain SS9)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LPD22 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PBPRB0577Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhotobacterium profundum (strain SS9)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri298386 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Photobacterium ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000593 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		298386.PBPRB0577

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini44 – 140LPD22InterPro annotationAdd BLAST97

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502ZABJ, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_233072_0_0_6

Identification of Orthologs from Complete Genome Data

More...OMAi		HRINKIA

Database of Orthologous Groups

More...OrthoDBi		142817at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040738, LPD22

Pfam protein domain database

More...Pfami		View protein in Pfam
PF18834, LPD22, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q6LJT0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSDFGVWMEE NQGNTNINEL DTPKEVTDLD NFLQNGEQQQ NFQLSTSMKY 
        60         70         80         90        100
GREADPERAG RVFRQQLKTG LPSELIERNL DDIEKQSAEK DFDPVAFRNK 
       110        120        130        140        150
SPLLSGWLQK PENAKVSHDD LENLSTMEWL FRAPVEAYQD GADQVRLGGL 
       160        170        180        190        200
RYKQMTSQLN DNELQFIDAY KKRGPRSYGA DSWIGEAFVG ATGQLSQFAP 
       210        220        230        240        250
MIEEGLKYGV PAGLTAGTFA LAAGQAGPQI ALPEEIFTVP GATALGLSSG 
       260        270        280        290        300
FAYGKAKQSF ELQTGLAYDE FKDFKDINGH PLDDDVAKGA AFFAGAFNAG 
       310        320        330        340        350
LDFVALDKLI ETIPGAKNIM SGGATAVIKQ ALKNPTVTEG LKRFSTEYGK 
       360        370        380        390        400
SVSAQVMIDA GQELVQMIAG ETAKRYQGNF ENSDMVAIGD RMVEALDASL 
       410        420        430        440        450
KANVVLSAPG HSMTLTGDLL KSRQAQQNKQ IMQQLGNSTQ QSKLHARAPE 
       460        470        480        490        500
KVRELMATVK ENGPVQDVMI PVEQWNTLFQ SESVDPLSMA AEILGDDGMQ 
       510        520        530        540        550
YREAAATGSD IMIPLDVYTE KLAGSQYHNM LLDDMRFEPD QMTAREAAAW 
       560        570        580        590        600
DASNQQNIEQ QAASIADFIT QPDETQFIFD DIVGQLKNTG MEMGTAETNA 
       610        620        630        640        650
IQMQSFFRTL SSRTGIDAKK LWSQYGPKVT REMPEVLKSA GGNFDIAVDP 
       660        670        680        690        700
ILDRIRANDI PELSDIQGKT MLETLREKGI QDVGGELSAR DVDVKLKPFQ 
       710        720        730        740        750
KKLISESGVT LDDAAQLMAE AGYIPADIDS VTQNDLLEAI DREMAGDPVY 
       760        770        780        790        800
SQLNENAKAL EDRETLLSMS GYLEDLGIDV SQVSNQDIKQ QLSNQIANEG 
       810        820        830        840        850
DGVTLNQAER GEIKISQDKK FQITFFKNAD LSTLLHESGH MYFEILQDID 
       860        870        880        890        900
KKGMASESIS NDLKTVRDWV GAKDGKDITT EQHEQFARGF EQYLREGKAP 
       910        920        930        940        950
TTELQSAFAR FRAWLVTIYR QASKLNVDVS EDVRQVFDRM LATDDQIKAA 
       960        970        980        990       1000
ETQMEYNRLF EDAESAGMTE AEFNRYQKDA TLAREQAQEE VTVKAFNEMQ 
      1010       1020       1030       1040       1050
REQKKWWKDA EIDMRDQVMA EMAENPTYQA VNYLQKGKLL DMDLPEGVEA 
      1060       1070       1080       1090       1100
LKLSKNALVE KYGKQFLKLL PRPYIYTKTG GAHPDQIAVL FGFSSGDEMM 
      1110       1120       1130       1140       1150
QLIVNARPMK DVVNAEVDTR MRQQYGDMMN DGTLPETAMD AAHNDRRASV 
      1160       1170       1180       1190       1200
LAAELKALSR RVSSRGAPTP AAMMKQAAQT VVDRKTVRSL KPSVYLNAER 
      1210       1220       1230       1240       1250
KAAKQALEAV LAGDYAAAAD AKQRQLLNFY MGNYTKKAKA ETDKSRDYLN 
      1260       1270       1280       1290       1300
SFNRPKKRQA LGKAGHDYLD QIDALLEKTE FKRVSLISLD RRKSLSEFIQ 
      1310       1320       1330       1340       1350
NQEEQGWTVE IPESLVKQTQ SRNWKDMTVE ELTGLRDAVK NIDYLARFKN 
      1360       1370       1380       1390       1400
KLLRQDEKRK FEEIVDAAVS SIEANNVVHE IKPNFAETWK DRVKENVSGF 
      1410       1420       1430       1440       1450
MASHTKMEFF FEWLDGDSAN GEAWRSFYKP INDADNKEKL MQESYTKRLA 
      1460       1470       1480       1490       1500
GILDAYTSKE RGKWYTDTSH IQHVGRVNKA MAMSVALNWG NVGNQQAVLD 
      1510       1520       1530       1540       1550
GYTRNDGKNW TETEAQRILE MLDQKDWDTI QKVWDLINDL WPEISKLQKD 
      1560       1570       1580       1590       1600
LTGVSPEKVE ASLIQTKYGE IKGGYYPLVY DQKLSYAVFK RDEKAATQDL 
      1610       1620       1630       1640       1650
FESNFSKPAT KKGHTIERTG SGGQAVKLDL SVISEHIDNV IHDITHRRAL 
      1660       1670       1680       1690       1700
MDTDRLIQNP RVRAAIEKTA GRQMYRQLRP WLQSIAREQQ PTFNYVETLI 
      1710       1720       1730       1740       1750
GKARTGATVV NMGLKVTTAI AQPLGVLNSV DELGVISMMK GIKDFYANSP 
      1760       1770       1780       1790       1800
VGMKKRLDFV TSRSAMMRNR QKTFDRDIKD AAKRLGKDKK FDKVRESFFY 
      1810       1820       1830       1840       1850
LTGLLDMGVS VPTWLAAYRK ALDGNVDGIT AGDENTAIDF ADRTVRVTQS 
      1860       1870       1880       1890       1900
EGGAKDLAKI QRGGEVFRSF TMFYSYFSVL HNQLRKRGRQ YVRGDTNTSQ 
      1910       1920       1930       1940       1950
LAASMFFLWF APAVLGELVA GRGPGDDEDW DKWALKEISS YPFQTVVFVR 
      1960       1970       1980       1990       2000
DLVNGLGDFG YSASPAFDAF EMSVKAVKLP YKAIAPDEEV KRSDVKAAVL 
      2010       2020       2030       2040 
AAGYWGQLPS RQAWITGEYV YDMMTGEEKP EDGFEMMRNL MLTRPRD
Length:2,047
Mass (Da):229,519
Last modified:July 5, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE66B0DCBC21E7A68
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CR378676 Genomic DNA Translation: CAG22450.1

NCBI Reference Sequences

More...RefSeqi		WP_011220668.1, NC_006371.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAG22450; CAG22450; PBPRB0577

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ppr:PBPRB0577

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR378676 Genomic DNA Translation: CAG22450.1
RefSeqiWP_011220668.1, NC_006371.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi298386.PBPRB0577

Genome annotation databases

EnsemblBacteriaiCAG22450; CAG22450; PBPRB0577
KEGGippr:PBPRB0577

Phylogenomic databases

eggNOGiENOG502ZABJ, Bacteria
HOGENOMiCLU_233072_0_0_6
OMAiHRINKIA
OrthoDBi142817at2

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
PfamiView protein in Pfam
PF18834, LPD22, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ6LJT0_PHOPR
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6LJT0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: October 7, 2020
This is version 59 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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