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Protein

LIM domain-containing protein

Gene

PINCH1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM domain-containing proteinUniRule annotation
Gene namesi
Name:PINCH1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

PTM / Processingi

Proteomic databases

PRIDEiQ6IYF7

Structurei

3D structure databases

ProteinModelPortaliQ6IYF7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 69LIM zinc-bindingInterPro annotationAdd BLAST62
Domaini71 – 128LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini133 – 190LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini191 – 250LIM zinc-bindingInterPro annotationAdd BLAST60
Domaini251 – 310LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG2272 Eukaryota
ENOG410XP46 LUCA
HOGENOMiHOG000253950
HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 3 hits
PS50023 LIM_DOMAIN_2, 5 hits

Sequencei

Sequence statusi: Complete.

Q6IYF7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANALANAIC ERCRGGFAPA EKIVNSNGEL YHEQCFVCAQ CFQQFPEGLF
60 70 80 90 100
YEFEGRKYCE HDFQMLFAPC CHQCGEFIIG RVIKAMNNSW HPDCFCCDIC
110 120 130 140 150
HKVLADIGFV KNAGRHLCRS CHNKEKARGL GKYICQKCHA IIDEQPLIFK
160 170 180 190 200
NDPYHPDHFN CANCGKELTA DARELKGELY CLPCHDKMGV PICGACRRPI
210 220 230 240 250
EGRVVNAMGK QWHVEHFVCA KCEKPFLGHR HYERKGLAYC ETHYNQLFGD
260 270 280 290 300
VCFHCNRVIE GDAVSALNKA WCVNCFACST CNTKLTLKNK FVEFDMKPVC
310 320
KKCYEKFPLE LKKRLKKLAE TVGRK
Length:325
Mass (Da):37,179
Last modified:July 5, 2004 - v1
Checksum:i44D34F6A27416B07
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY612853 mRNA Translation: AAT36748.1
RefSeqiNP_001001766.1, NM_001001766.1
UniGeneiGga.15049

Genome annotation databases

GeneIDi414880
KEGGigga:414880

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY612853 mRNA Translation: AAT36748.1
RefSeqiNP_001001766.1, NM_001001766.1
UniGeneiGga.15049

3D structure databases

ProteinModelPortaliQ6IYF7
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ6IYF7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi414880
KEGGigga:414880

Organism-specific databases

CTDi3987

Phylogenomic databases

eggNOGiKOG2272 Eukaryota
ENOG410XP46 LUCA
HOGENOMiHOG000253950
HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 3 hits
PS50023 LIM_DOMAIN_2, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ6IYF7_CHICK
AccessioniPrimary (citable) accession number: Q6IYF7
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 28, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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