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Protein

LIM domain-containing protein

Gene

lims1

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM domain-containing proteinUniRule annotation
Gene namesi
Name:lims1Imported
Synonyms:MGC81174Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-6255974 lims1

Structurei

3D structure databases

ProteinModelPortaliQ6INR9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 80LIM zinc-bindingInterPro annotationAdd BLAST62
Domaini82 – 139LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini144 – 201LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini202 – 261LIM zinc-bindingInterPro annotationAdd BLAST60
Domaini262 – 321LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 2 hits
PS50023 LIM_DOMAIN_2, 5 hits

Sequencei

Sequence statusi: Complete.

Q6INR9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLGVVGMTNS NMANALANAI CERCRSGFAP SEKIVNSNGE LYHEQCFVCA
60 70 80 90 100
QCFQQFPEGL FYEFEGRKYC EHDFQMLFAP CCHQCGEFII GRVIKAMNNS
110 120 130 140 150
WHPECFRCDI CQQVLADIGF VKNAGRHLCR PCHNREKARG LGKYICQKCH
160 170 180 190 200
AIIEEHPLIF KNDPYHPDHF NCANCGKELT ADVRELKGEL YCLPCHDKMG
210 220 230 240 250
VPICGACRRP IEGRVVNAMG KQWHVEHFVC AKCEKPFLGH RHYERKGLAY
260 270 280 290 300
CETHYNQLFG DVCFHCNRVI EGDVVSALNK AWCVNCFACS TCNTKLTLKN
310 320 330
KFVEFDMKPV CKKCYEKFPL ELKKRLKKLS EPLAKK
Length:336
Mass (Da):38,517
Last modified:July 5, 2004 - v1
Checksum:iAF953785DDEB218B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC072204 mRNA Translation: AAH72204.1
RefSeqiNP_001085121.1, NM_001091652.1
UniGeneiXl.8188

Genome annotation databases

GeneIDi432196
KEGGixla:432196

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC072204 mRNA Translation: AAH72204.1
RefSeqiNP_001085121.1, NM_001091652.1
UniGeneiXl.8188

3D structure databases

ProteinModelPortaliQ6INR9
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi432196
KEGGixla:432196

Organism-specific databases

CTDi432196
XenbaseiXB-GENE-6255974 lims1

Phylogenomic databases

HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 2 hits
PS50023 LIM_DOMAIN_2, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ6INR9_XENLA
AccessioniPrimary (citable) accession number: Q6INR9
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 28, 2018
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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