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Protein
Submitted name:

Agarase

Gene

agaA

Organism
Microbulbifer thermotolerans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BRENDAi3.2.1.81 11749

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH16 Glycoside Hydrolase Family 16

Names & Taxonomyi

Protein namesi
Submitted name:
AgaraseImported
Submitted name:
Beta-agaraseImported
Gene namesi
Name:agaAImported
ORF Names:SAMN05660479_02361Imported
OrganismiMicrobulbifer thermotoleransImported
Taxonomic identifieri252514 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaCellvibrionalesMicrobulbiferaceaeMicrobulbifer
Proteomesi
  • UP000181967 Componenti: Unassembled WGS sequence

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_501050667921 – 433Sequence analysisAdd BLAST413

Structurei

3D structure databases

SMRiQ6F4N4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 295GH16InterPro annotationAdd BLAST275
Domaini300 – 431CBM6InterPro annotationAdd BLAST132

Keywords - Domaini

SignalSequence analysis

Family and domain databases

CDDicd02178 GH16_beta_agarase, 1 hit
Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR016287 Beta_agarase
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR000757 GH16
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF00722 Glyco_hydro_16, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit
PS51762 GH16_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q6F4N4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKITSILLT CVMGCTATYA ADWDGVPVPA NPGSGKTWEL HPLSDDFNYE
60 70 80 90 100
APAAGKSTRF YERWKEGFIN PWTGPGLTEW HPHYSYVSGG KLAITSGRKP
110 120 130 140 150
GTNQVYLGSI TSKAPLTYPV YMEARAKLSN MVLASDFWFL SADSTEEIDV
160 170 180 190 200
IEAYGSDRPG QEWYAERLHL SHHVFIRDPF QDYQPTDAGS WYADGKGTKW
210 220 230 240 250
RDAFHRVGVY WRDPWHLEYY VDGKLVRTVS GQDIIDPNGF TGGTGLSKPM
260 270 280 290 300
YAIINMEDQN WRSDNGITPT DAELADPNRN TYYVDWVRFY KPVPINGNAT
310 320 330 340 350
TVELGNFHNT GKDGANVTGD TVLGFNKNGN NINYNTKGDW ADYTVNLPAA
360 370 380 390 400
GEYRVDLVIA SPMSSGLGAE LTFAGNAAKT VTLSNTGGWE SYQTFTLPQT
410 420 430
ISVSSPGNYN FRLKSTGSSN WQWNGDEIRF VKL
Length:433
Mass (Da):48,204
Last modified:August 16, 2004 - v1
Checksum:iCA71B4E105671F62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB124837 Genomic DNA Translation: BAD29947.1
AB516430 Genomic DNA Translation: BAK08910.1
FOKT01000006 Genomic DNA Translation: SFC74870.1
RefSeqiWP_074903249.1, NZ_FOKT01000006.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB124837 Genomic DNA Translation: BAD29947.1
AB516430 Genomic DNA Translation: BAK08910.1
FOKT01000006 Genomic DNA Translation: SFC74870.1
RefSeqiWP_074903249.1, NZ_FOKT01000006.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3WZ1X-ray1.60A19-300[»]
SMRiQ6F4N4
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH16 Glycoside Hydrolase Family 16

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BRENDAi3.2.1.81 11749

Family and domain databases

CDDicd02178 GH16_beta_agarase, 1 hit
Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR016287 Beta_agarase
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR000757 GH16
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF00722 Glyco_hydro_16, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit
PS51762 GH16_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ6F4N4_9GAMM
AccessioniPrimary (citable) accession number: Q6F4N4
Entry historyiIntegrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: November 22, 2017
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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