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Entry version 74 (26 Feb 2020)
Sequence version 1 (16 Aug 2004)
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Protein
Submitted name:

Rhs-family protein

Gene

ECA4278

Organism
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rhs-family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:ECA4278Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri218491 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007966 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei48 – 73HelicalSequence analysisAdd BLAST26
Transmembranei79 – 99HelicalSequence analysisAdd BLAST21

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
218491.ECA4278

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini655 – 729POLO boxInterPro annotationAdd BLAST75

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni17 – 42DisorderedSequence analysisAdd BLAST26

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi23 – 37Pro-richSequence analysisAdd BLAST15

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105CNA Bacteria
COG3209 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001218_1_8_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
EGRTWRY

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008727 PAAR_motif
IPR000959 POLO_box_dom
IPR022385 Rhs_assc_core
IPR031325 RHS_repeat
IPR006530 YD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05488 PAAR_motif, 1 hit
PF05593 RHS_repeat, 5 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03696 Rhs_assc_core, 1 hit
TIGR01643 YD_repeat_2x, 7 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50078 POLO_BOX, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q6CZ75-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRDEILARIA RVGAMHAGNR PTLPPDLPAP GSGSPPTSPD KPIKHSSFLG
60 70 80 90 100
ALLGAVAGAL VAAAVAAVAV ALVGVTGGLA IALVGGLAVL GAGSLISAVS
110 120 130 140 150
GRVSAMVDSA SPPAGAVADG SPNVSVEGNP VSRAEVDAVA CTKHSGPQLI
160 170 180 190 200
AQGSETVFVN GHPAARIGDK TVCGATIKEG ASTVFFGSGQ ATVLEIQDEF
210 220 230 240 250
SGWQKALLIA VEFLVPPTRG LFRGLGKLFF RGPKAVMKGL GAGALWAGKR
260 270 280 290 300
FKQKTRCATR AFKANKGRAR VTQAAKAFKK DPVYIASGEV IENRTDIELG
310 320 330 340 350
QTLPLVFERT YRTASSHVGL LGHGWQDSWS EVATVSRDDG DTHVVITLAQ
360 370 380 390 400
GYNIDFTFGV GTTVVYCAEY PEFKLVRRHN GFHLWHRDSQ TWRAFTVRQD
410 420 430 440 450
DQLLLSAITD NHFNRIDFIR DPKGYLRKVQ HSDGIELLLV WQGEFLRQVQ
460 470 480 490 500
RIDGGQKTVL AEYRQDEQGR LIEADAAHAY HLFYEYDNHN RLARWHDNDQ
510 520 530 540 550
TWAQYEYDHQ GCCIYTTCAD GYLTANFEYL ADRVVMTDGL GQRHEYGFND
560 570 580 590 600
LYLMTWEKSP LGHITRFEYD DVGNLLREIS PAGRMVEFAY LGDSGLVSTF
610 620 630 640 650
TDGSGHQWHY DYDDSDRLTS ITDPLGRNWV WQYDTKGNPQ SLTGPDNSEV
660 670 680 690 700
HFAWNRYGLL TEVSDQGGQV QASLFYDHRQ RLLSATDAES RTQQLRYDQQ
710 720 730 740 750
DRLTTWTRPD GSTYRLGYRR ASWKLPEQLL RPDDKQEQRQ YDKHNNLLNY
760 770 780 790 800
TDGNGAVWRQ TYGPFDLLTS RTDAEGRTWR YEYDKESQQL VAVIAPDGNR
810 820 830 840 850
WQWWLDADAR VIREQDMAGT ETRYGYDEDG HCISIHNGEG ETRHFLYDGR
860 870 880 890 900
GLLIKETAPD DTLHYRYDGA GRLTEVTSAT SYIQLSYDVR DRVVQERNSG
910 920 930 940 950
TEIRRHYQAE SDAVTRSLYW EGEESSAALT STFRYSATGE LRQVQLPDDA
960 970 980 990 1000
ELTLAHDAAG REAARNSNGG FMQQREYDAM GWLTREMSGQ QRDGRLQAEQ
1010 1020 1030 1040 1050
SREHLYDGAG NLTGTRHNRE AEGYRLDASG RVLTVLSGGT GRTVNTEEEY
1060 1070 1080 1090 1100
RYTRTGLPQD ATRLTEWQAS RLIQRDDTHY QYDKAGRLIR KQVVQPGYRP
1110 1120 1130 1140 1150
QVWHYRWDSR NQLRVVDTPT GERWFYRYDP FGRRTGKRCD QKAEDIRYLW
1160 1170 1180 1190 1200
DGDQIAEVRH YRENQLISRR HWVHNGWELL VQQRQNTDGN WETDFVTSSH
1210 1220 1230 1240 1250
NGEPQAIFNQ AGELRWQAPR TNLWGHRTTD NTESLDPGLA FAGQYRDEES
1260 1270 1280 1290 1300
GLCYNRFRYY DPSGGCYISP DPIGIRGGLN LYAYVKNPVN WIDPKGLAGC
1310 1320 1330 1340 1350
NIVHRAVTPE QAASIRAGNG ISRPTPYHRT TPTQHVAGAP HSRDPWISTT
1360 1370 1380 1390 1400
RSQSTAEYFA THGGTQAANP IVNIDLSKIP SDKILDVSNA QKAAEHLQTP
1410 1420
FTRNVAAAHQ EVLIFGEIPS EAIIGFL
Length:1,427
Mass (Da):160,168
Last modified:August 16, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6BC4B5B896E49682
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX950851 Genomic DNA Translation: CAG77175.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAG77175; CAG77175; ECA4278

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
eca:ECA4278

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950851 Genomic DNA Translation: CAG77175.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi218491.ECA4278

Genome annotation databases

EnsemblBacteriaiCAG77175; CAG77175; ECA4278
KEGGieca:ECA4278

Phylogenomic databases

eggNOGiENOG4105CNA Bacteria
COG3209 LUCA
HOGENOMiCLU_001218_1_8_6
OMAiEGRTWRY

Family and domain databases

InterProiView protein in InterPro
IPR008727 PAAR_motif
IPR000959 POLO_box_dom
IPR022385 Rhs_assc_core
IPR031325 RHS_repeat
IPR006530 YD
PfamiView protein in Pfam
PF05488 PAAR_motif, 1 hit
PF05593 RHS_repeat, 5 hits
TIGRFAMsiTIGR03696 Rhs_assc_core, 1 hit
TIGR01643 YD_repeat_2x, 7 hits
PROSITEiView protein in PROSITE
PS50078 POLO_BOX, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ6CZ75_PECAS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q6CZ75
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: February 26, 2020
This is version 74 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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