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Entry version 93 (13 Feb 2019)
Sequence version 2 (26 Feb 2008)
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Protein

RAB6A-GEF complex partner protein 1

Gene

Ric1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

The RIC1-RGP1 complex acts as a guanine nucleotide exchange factor (GEF), which activates RAB6A by exchanging bound GDP for free GTP and may thereby required for efficient fusion of endosome-derived vesicles with the Golgi compartment. The RIC1-RGP1 complex participates in the recycling of mannose-6-phosphate receptors. Required for phosphorylation and localization of GJA1.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGuanine-nucleotide releasing factor

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-6811438 Intra-Golgi traffic
R-MMU-6811440 Retrograde transport at the Trans-Golgi-Network
R-MMU-8876198 RAB GEFs exchange GTP for GDP on RABs

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RAB6A-GEF complex partner protein 1By similarity
Alternative name(s):
Protein RIC1 homologBy similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ric1Imported
Synonyms:Kiaa1432
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 19

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1924893 Ric1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1266 – 1286HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Cytoplasm, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003206631 – 1422RAB6A-GEF complex partner protein 1Add BLAST1422

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei991PhosphothreonineCombined sources1
Modified residuei995PhosphothreonineCombined sources1
Modified residuei1014PhosphoserineBy similarity1
Modified residuei1016PhosphoserineBy similarity1
Modified residuei1018PhosphoserineBy similarity1
Modified residuei1036PhosphoserineBy similarity1
Modified residuei1171PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q69ZJ7

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q69ZJ7

PeptideAtlas

More...
PeptideAtlasi
Q69ZJ7

PRoteomics IDEntifications database

More...
PRIDEi
Q69ZJ7

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q69ZJ7

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q69ZJ7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000038658 Expressed in 234 organ(s), highest expression level in cardiac ventricle

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q69ZJ7 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Forms a complex with RGP1; the interaction enhances RAB6A GTPase activity. Interacts (via central domain) with RGP1. Interacts with RAB6A; the interaction is direct with a preference for RAB6A-GDP. Interacts (via C-terminus domain) with RAB33B; the interaction is direct with a preference for RAB33B-GTP. Interacts with GJA1.By similarity

GO - Molecular functioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q69ZJ7, 1 interactor

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000043437

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q69ZJ7

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati64 – 103WD 1Add BLAST40
Repeati304 – 343WD 2Add BLAST40

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RIC1 family.Curated

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix, WD repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2006 Eukaryota
ENOG410XT5J LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000002955

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000047604

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG091027

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q69ZJ7

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q69ZJ7

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.130.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011044 Quino_amine_DH_bsu
IPR009771 Ribosome_control_1
IPR040096 Ric1
IPR015943 WD40/YVTN_repeat-like_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR22746 PTHR22746, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07064 RIC1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50969 SSF50969, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 4 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q69ZJ7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MYFLSGWPKR LLCAPRSPAE APLHVQSDPR RAFFAVLAPA RLSIWYSRPS
60 70 80 90 100
VLIVTYKEPA KSSTQFGSYK QAEWRPDSTM IAVSTANGYI LFFHITSSRG
110 120 130 140 150
DKYLYEPVYP KGSPQMKGIP HFKEEHCAPA LNLEMKKILD LQAPIMSLQS
160 170 180 190 200
VLEDLLVATS DGLLHLIHWE GMTNGRKAIN LSTVPFSVDL QSSRVGSFLG
210 220 230 240 250
FADVHIKDME YCATLDGFAV VFNDGKVGFI TPVSSRFTAE QLHGVWPQDV
260 270 280 290 300
IDGTCVAVNN KYRLMAFGCA SGCVQVYTID NTTGAMLLSH KLELTAKQYP
310 320 330 340 350
DIWNKTGAVK LIRWSPDNSA VIVTWEYGGL SLWSVFGAQL ICTLGGDFAY
360 370 380 390 400
RSDGTKKDPL KINSMSWGAE GYHLWVISGL GSQHTQIETD LRSTVKEPSI
410 420 430 440 450
LLFQFIKSVL TVNPCMSNQE QVLLQGEDRL YLNCGEASQA QNPKYSSARA
460 470 480 490 500
ERMPRHEKSP FADGGLEAPG LSTLLGHRHW HVVQISSTYL ESNWPIRFSA
510 520 530 540 550
IDKLGQNIAV AGKFGFAHYS LLTKKWKLFG NITQEQNMIV TGGLAWWDDF
560 570 580 590 600
MVLACYNLSD CQEELRIYLR TSNLDNAFAH VTKAPMETLL LSVFRDMVVV
610 620 630 640 650
FRADCSICLY SIERKSDGSN TTASVQVLQE VSMSRYIPHP FLVVSVTLTS
660 670 680 690 700
VSTENGISLK MPQQARDAES IMLNLAGQLI MMQRDRSGPQ IREKDSHPNQ
710 720 730 740 750
RKLLPFCPPV VLAQSVENVW TTCRANKQKR HLLEALWLSC GGAGMKVWLP
760 770 780 790 800
LFPRDHRKPH SFLSQRIMLP FHINIYPLAV LFEDALVLGA VNDTLLYDSL
810 820 830 840 850
YTRSSAREQL EVLFPFCVVE RTSQIYLHHI LRQLLVRNLG EQALLLAQSC
860 870 880 890 900
AALPYFPHVL ELMLHEVLEE EATSREPIPD PLLPTVAKFI TEFPLFLQTV
910 920 930 940 950
VHCARKTEYA LWNYLFAAVG NPKDLFEECL MAQDLDTAAS YLIILQNMEV
960 970 980 990 1000
PAVSRQHATL LFNTALEQGK WDLCRHMIRF LKAIGSGESE TPPSTPTSQE
1010 1020 1030 1040 1050
PSSSGGFEFF RNRSISLSQS AENVPPGKFG LQKTLSMPTG PSGKRWSKDS
1060 1070 1080 1090 1100
ECAENMYIDM MLWRHARRLL EEVRLKDLGC FAAQLGFELI SWLCKERTRA
1110 1120 1130 1140 1150
ARVDNFVVAL KRLHKDFLWP LPIIPASSIS SPFKNGKCRA VGEQMLKSQS
1160 1170 1180 1190 1200
ADPFITPEMD AGISNIQRSQ SWLSNIGPTH RDTDRASSPG PQMQDAFLSP
1210 1220 1230 1240 1250
LSNKGDECSI GSATDLTESS SVVDGDWTMV DENFSTLSLT QSELEHISME
1260 1270 1280 1290 1300
LASKGPHKSQ VQLRYLLHIF MEAGCLDWCV VIGLILRESS VVSQLLGIAQ
1310 1320 1330 1340 1350
SSEMDGEMLQ NIKSGLQAVD RWASTDCPGY KPFLNIIKPQ LQKLSEITEE
1360 1370 1380 1390 1400
LVQPDTFQPV TVGKTPEQTS PRAEENRGSC SHGSISQSEP GSNNVVSRKE
1410 1420
EDTTQADEEE PLQDGAYDCS VS
Length:1,422
Mass (Da):158,829
Last modified:February 26, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA04A6F728116351E
GO
Isoform 2 (identifier: Q69ZJ7-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     485-541: ISSTYLESNW...ITQEQNMIVT → VSVHLLTAAD...YSKSYFFFPQ
     542-1422: Missing.

Note: No experimental confirmation available.
Show »
Length:541
Mass (Da):60,378
Checksum:i891F24A9A0D9BDDF
GO
Isoform 3 (identifier: Q69ZJ7-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     147-157: SLQSVLEDLLV → RYGMLVKFEIF
     158-1422: Missing.

Show »
Length:157
Mass (Da):17,962
Checksum:i443E7B3CDD3A6EAD
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9QPA1E9QPA1_MOUSE
RAB6A-GEF complex partner protein 1
Ric1 C030046E11Rik
1,422Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6S7U1F6S7U1_MOUSE
RAB6A-GEF complex partner protein 1
Ric1 C030046E11Rik
1,314Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7DEJ0F7DEJ0_MOUSE
RAB6A-GEF complex partner protein 1
Ric1 C030046E11Rik
444Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7CN51F7CN51_MOUSE
RAB6A-GEF complex partner protein 1
Ric1 C030046E11Rik
163Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_031708147 – 157SLQSVLEDLLV → RYGMLVKFEIF in isoform 3. 2 PublicationsAdd BLAST11
Alternative sequenceiVSP_031709158 – 1422Missing in isoform 3. 2 PublicationsAdd BLAST1265
Alternative sequenceiVSP_031710485 – 541ISSTY…NMIVT → VSVHLLTAADSLIRNGSLGR FLIIFIAISLSMLWFLSLPF FFPFDRVYSKSYFFFPQ in isoform 2. 1 PublicationAdd BLAST57
Alternative sequenceiVSP_031711542 – 1422Missing in isoform 2. 1 PublicationAdd BLAST881

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK136285 mRNA Translation: BAE22914.1
AK156653 mRNA Translation: BAE33795.1
AK048394 mRNA Translation: BAC33322.1
BC132346 mRNA Translation: AAI32347.2
AK173171 mRNA Translation: BAD32449.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS37951.1 [Q69ZJ7-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.353838

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000162184; ENSMUSP00000124788; ENSMUSG00000038658 [Q69ZJ7-3]

UCSC genome browser

More...
UCSCi
uc008hdq.1 mouse [Q69ZJ7-3]
uc008hdr.1 mouse [Q69ZJ7-2]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK136285 mRNA Translation: BAE22914.1
AK156653 mRNA Translation: BAE33795.1
AK048394 mRNA Translation: BAC33322.1
BC132346 mRNA Translation: AAI32347.2
AK173171 mRNA Translation: BAD32449.1
CCDSiCCDS37951.1 [Q69ZJ7-1]
UniGeneiMm.353838

3D structure databases

ProteinModelPortaliQ69ZJ7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ69ZJ7, 1 interactor
STRINGi10090.ENSMUSP00000043437

PTM databases

iPTMnetiQ69ZJ7
PhosphoSitePlusiQ69ZJ7

Proteomic databases

jPOSTiQ69ZJ7
PaxDbiQ69ZJ7
PeptideAtlasiQ69ZJ7
PRIDEiQ69ZJ7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000162184; ENSMUSP00000124788; ENSMUSG00000038658 [Q69ZJ7-3]
UCSCiuc008hdq.1 mouse [Q69ZJ7-3]
uc008hdr.1 mouse [Q69ZJ7-2]

Organism-specific databases

MGIiMGI:1924893 Ric1

Rodent Unidentified Gene-Encoded large proteins database

More...
Rougei
Search...

Phylogenomic databases

eggNOGiKOG2006 Eukaryota
ENOG410XT5J LUCA
GeneTreeiENSGT00390000002955
HOGENOMiHOG000047604
HOVERGENiHBG091027
InParanoidiQ69ZJ7
PhylomeDBiQ69ZJ7

Enzyme and pathway databases

ReactomeiR-MMU-6811438 Intra-Golgi traffic
R-MMU-6811440 Retrograde transport at the Trans-Golgi-Network
R-MMU-8876198 RAB GEFs exchange GTP for GDP on RABs

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Ric1 mouse

Protein Ontology

More...
PROi
PR:Q69ZJ7

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000038658 Expressed in 234 organ(s), highest expression level in cardiac ventricle
ExpressionAtlasiQ69ZJ7 baseline and differential

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR011044 Quino_amine_DH_bsu
IPR009771 Ribosome_control_1
IPR040096 Ric1
IPR015943 WD40/YVTN_repeat-like_dom_sf
PANTHERiPTHR22746 PTHR22746, 1 hit
PfamiView protein in Pfam
PF07064 RIC1, 1 hit
SUPFAMiSSF50969 SSF50969, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRIC1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q69ZJ7
Secondary accession number(s): A4GZ02, Q3U0Q6, Q3UWK1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: February 13, 2019
This is version 93 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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