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Protein

Uncharacterized protein U88

Gene

U88

Organism
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus)
Status
Reviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein U88
Gene namesi
Name:U88
OrganismiHuman herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus)
Taxonomic identifieri10370 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageHerpesviralesHerpesviridaeBetaherpesvirinaeRoseolovirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000009295 Componenti: Genome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei115 – 135HelicalSequence analysisAdd BLAST21
Transmembranei139 – 159HelicalSequence analysisAdd BLAST21
Transmembranei171 – 191HelicalSequence analysisAdd BLAST21
Transmembranei197 – 217HelicalSequence analysisAdd BLAST21
Transmembranei233 – 253HelicalSequence analysisAdd BLAST21
Transmembranei259 – 279HelicalSequence analysisAdd BLAST21
Transmembranei280 – 300HelicalSequence analysisAdd BLAST21
Transmembranei304 – 324HelicalSequence analysisAdd BLAST21
Transmembranei330 – 350HelicalSequence analysisAdd BLAST21
Transmembranei352 – 372HelicalSequence analysisAdd BLAST21
Transmembranei389 – 409HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003425841 – 413Uncharacterized protein U88Add BLAST413

Proteomic databases

PRIDEiQ69566

Structurei

3D structure databases

ProteinModelPortaliQ69566
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi80 – 407Cys-richAdd BLAST328

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Sequencei

Sequence statusi: Complete.

Q69566-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYVSVSVHVS VHVSVRVSVR VSVCVSVRVS VHVSVRVSVS VRVSVRVSVS
60 70 80 90 100
VRVSVRVSVS VHVSVRVSVR VSVSVRVSVC ARVCARVCVC ARVCVCARVC
110 120 130 140 150
VCARVCVCAR VCARVCVCAC VCVCACLCVC ACLCVCACLC VCACLCVCAC
160 170 180 190 200
LCVCACLCVC ACLCVCACLC VCVCVCLCVC VCLCVCVCLC VCVCLCVCVC
210 220 230 240 250
LCVCVCLCVC VCLCVCVCLC VCVCLCVCVC LCVCVCVCVC VCVCVCVCVC
260 270 280 290 300
VCVCVCLCVC VCLCVCLCVC LCVCVCVCVC LCVCLCVCLC VCVCVCVCLL
310 320 330 340 350
CMSLCMCMCM CMCMCMCMCM CMSLCMSLCM CMCMCMCMCM CICMCMCICI
360 370 380 390 400
CMCMCMCMCM CMCMCMCMCM CMCMCMCMCM CMCMCMCMCM CMCMCMCMCM
410
CMCMCMCIIE GNK
Length:413
Mass (Da):44,135
Last modified:November 1, 1996 - v1
Checksum:i6306069949151A4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83413 Genomic DNA Translation: CAA58337.1

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83413 Genomic DNA Translation: CAA58337.1

3D structure databases

ProteinModelPortaliQ69566
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ69566

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiU88_HHV6U
AccessioniPrimary (citable) accession number: Q69566
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 46 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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