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Entry version 93 (19 Jan 2022)
Sequence version 1 (01 Nov 1996)
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Protein

Capsid scaffolding protein

Gene

UL26

Organism
Human herpesvirus 2 (HHV-2) (Human herpes simplex virus 2)
Status
Unreviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Assemblin: Protease that plays an essential role in virion assembly within the nucleus. Catalyzes the cleavage of the assembly protein after formation of the spherical procapsid. By that cleavage, the capsid matures and gains its icosahedral shape. The cleavage sites seem to include -Ala-Ser-, -Ala-Ala-, as well as Ala-Thr bonds. Assemblin and cleavages products are evicted from the capsid before or during DNA packaging.

UniRule annotation

Assembly protein: Plays a major role in capsid assembly. Acts as a scaffold protein by binding major capsid protein. Multimerizes in the nucleus such as major capsid protein forms the icosahedral T=16 capsid. Cleaved by assemblin after capsid completion. The cleavages products are evicted from the capsid before or during DNA packaging.

UniRule annotation

Capsid scaffolding protein: Acts as a scaffold protein by binding major capsid protein in the cytoplasm, inducing the nuclear localization of both proteins. Multimerizes in the nucleus such as major capsid protein forms the icosahedral T=16 capsid. Autocatalytic cleavage releases the assembly protein, and subsequently abolishes interaction with major capsid protein. Cleavages products are evicted from the capsid before or during DNA packaging.

UniRule annotation

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Cleaves -Ala-|-Ser- and -Ala-|-Ala- bonds in the scaffold protein.UniRule annotation EC:3.4.21.97

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei61Charge relay systemUniRule annotation1
Active sitei129Charge relay systemUniRule annotation1
Active sitei148Charge relay systemUniRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, Protease, Serine proteaseUniRule annotation
Biological processViral capsid assemblyUniRule annotationARBA annotation, Viral release from host cell

Protein family/group databases

MEROPS protease database

More...
MEROPSi
S21.001

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Capsid scaffolding proteinUniRule annotation
Alternative name(s):
Protease precursorUniRule annotation
Short name:
pPRUniRule annotation
Cleaved into the following 2 chains:
AssemblinUniRule annotation (EC:3.4.21.97UniRule annotation)
Alternative name(s):
ProteaseUniRule annotation
Assembly proteinUniRule annotation
Alternative name(s):
Capsid assembly proteinUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:UL26Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHuman herpesvirus 2 (HHV-2) (Human herpes simplex virus 2)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10310 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesDuplodnaviriaHeunggongviraePeploviricotaHerviviricetesHerpesviralesHerpesviridaeAlphaherpesvirinaeSimplexvirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiHomo sapiens (Human) [TaxID: 9606]

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Host cytoplasmUniRule annotationARBA annotation, Host nucleusUniRule annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_50331675831 – 638Capsid scaffolding proteinUniRule annotationAdd BLAST638
ChainiPRO_50331675811 – 247AssemblinUniRule annotationAdd BLAST247
ChainiPRO_5033167582248 – 638Assembly proteinUniRule annotationAdd BLAST391

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Capsid scaffolding protein is cleaved by assemblin after formation of the spherical procapsid. As a result, the capsid obtains its mature, icosahedral shape. Cleavages occur at two or more sites: release and tail site.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei247 – 248Cleavage; by assemblin; Release siteUniRule annotation2
Sitei613 – 614Cleavage; by assemblin; Tail siteUniRule annotation2

Keywords - PTMi

PhosphoproteinUniRule annotationARBA annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Capsid scaffolding protein homomultimerizes and interacts with major capsid protein. Assemblin exists in a monomer-dimer equilibrium with the dimer being the active species. Assembly protein homomultimerizes and interacts with major capsid protein.

UniRule annotation

GO - Molecular functioni

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q69527

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni262 – 327DisorderedSequence analysisAdd BLAST66
Regioni415 – 480DisorderedSequence analysisAdd BLAST66
Regioni503 – 609DisorderedSequence analysisAdd BLAST107
Regioni618 – 638Interaction with major capsid proteinUniRule annotationAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi291 – 309Polar residuesSequence analysisAdd BLAST19
Compositional biasi424 – 468Basic and acidic residuesSequence analysisAdd BLAST45
Compositional biasi532 – 599Pro residuesSequence analysisAdd BLAST68

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Region of interaction between pPR and pAP is called Amino conserved domain (ACD). The region of interaction with major capsid protein is called carboxyl conserved domain (CCD).UniRule annotation

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the herpesviridae capsid scaffolding protein family.UniRule annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.20.16.10, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_04008, HSV_SCAF, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR035443, Herpes_virus_sf
IPR001847, Peptidase_S21

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00716, Peptidase_S21, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00236, HSVCAPSIDP40

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q69527-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASAEMRERL EAPLPDRAVP IYVAGFLALY DSGDPGELAL DPDTVRAALP
60 70 80 90 100
PENPLPINVD HRARCEVGRV LAVVNDPRGP FFVGLIACVQ LERVLETAAS
110 120 130 140 150
AAIFERRGPA LSREERLLYL ITNYLPSVSL STKRRGDEVP PDRTLFAHVA
160 170 180 190 200
LCAIGRRLGT IVTYDTSLDA AIAPFRHLDP ATREGVRREA AEAELALAGR
210 220 230 240 250
TWAPGVEALT HTLLSTAVNN MMLRDRWSLV AERRRQAGIA GHTYLQASEK
260 270 280 290 300
FKIWGAESAP APERGYKTGA PGAMDTSPAA SVPAPQVAVR ARQVASSSSS
310 320 330 340 350
SSSFPAPADM NPVSASGAPA PPPPGDGSYL WIPASHYNQL VTGQSAPRHP
360 370 380 390 400
PLTACGLPAA GTVAYGHPGA GPSPHYPPPP AHPYPGMLFA GPSPLEAQIA
410 420 430 440 450
ALVGAIAADR QAGGLPAAAG DHGIRGSAKR RRHEVEQPEY DCGRDEPDRD
460 470 480 490 500
FPYYPGEARP EPRPVDSRRA ARQASGPHET ITALVGAVTS LQQELAHMRA
510 520 530 540 550
RTHAPYGPYP PVGPYHHPHA DTETPAQPPR YPAEAVYLPP PHIAPPGPPL
560 570 580 590 600
SGAVPPPSYP PVAVTPGPAP PLHQPSPAHA HPPPPPPGPT PPPAASLPQP
610 620 630
EAPGAEAGAL VNASSAAHVN VDTARAADLF VSQMMGSR
Length:638
Mass (Da):67,029
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i992F230937BBAE89
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
U49329 Genomic DNA Translation: AAA92139.1
KX574864 Genomic DNA Translation: AQZ56000.2
KX574865 Genomic DNA Translation: AQZ56071.2
KX574880 Genomic DNA Translation: AQZ57136.2
KX574888 Genomic DNA Translation: AQZ57704.2
KX574891 Genomic DNA Translation: AQZ57917.2
KX574895 Genomic DNA Translation: AQZ58201.2
KX574896 Genomic DNA Translation: AQZ58272.2
KX574899 Genomic DNA Translation: AQZ58485.2
KY922724 Genomic DNA Translation: ATD86607.1
MK105998 Genomic DNA Translation: QAU10580.1
MK105999 Genomic DNA Translation: QAU10654.1
MH790551 Genomic DNA Translation: QBH75675.1
MH790555 Genomic DNA Translation: QBH76007.1
MH790557 Genomic DNA Translation: QBH76258.1
MH790560 Genomic DNA Translation: QBH76528.1
MH790568 Genomic DNA Translation: QBH77196.1
MH790582 Genomic DNA Translation: QBH78280.1
MH790588 Genomic DNA Translation: QBH78866.1
MH790598 Genomic DNA Translation: QBH79635.1
MH790600 Genomic DNA Translation: QBH79817.1
MH790601 Genomic DNA Translation: QBH79906.1
MH790602 Genomic DNA Translation: QBH80010.1
MH790608 Genomic DNA Translation: QBH80573.1
MH790626 Genomic DNA Translation: QBH82098.1
MH790633 Genomic DNA Translation: QBH82693.1
MH790638 Genomic DNA Translation: QBH83222.1
MK855052 Genomic DNA Translation: QJQ80770.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49329 Genomic DNA Translation: AAA92139.1
KX574864 Genomic DNA Translation: AQZ56000.2
KX574865 Genomic DNA Translation: AQZ56071.2
KX574880 Genomic DNA Translation: AQZ57136.2
KX574888 Genomic DNA Translation: AQZ57704.2
KX574891 Genomic DNA Translation: AQZ57917.2
KX574895 Genomic DNA Translation: AQZ58201.2
KX574896 Genomic DNA Translation: AQZ58272.2
KX574899 Genomic DNA Translation: AQZ58485.2
KY922724 Genomic DNA Translation: ATD86607.1
MK105998 Genomic DNA Translation: QAU10580.1
MK105999 Genomic DNA Translation: QAU10654.1
MH790551 Genomic DNA Translation: QBH75675.1
MH790555 Genomic DNA Translation: QBH76007.1
MH790557 Genomic DNA Translation: QBH76258.1
MH790560 Genomic DNA Translation: QBH76528.1
MH790568 Genomic DNA Translation: QBH77196.1
MH790582 Genomic DNA Translation: QBH78280.1
MH790588 Genomic DNA Translation: QBH78866.1
MH790598 Genomic DNA Translation: QBH79635.1
MH790600 Genomic DNA Translation: QBH79817.1
MH790601 Genomic DNA Translation: QBH79906.1
MH790602 Genomic DNA Translation: QBH80010.1
MH790608 Genomic DNA Translation: QBH80573.1
MH790626 Genomic DNA Translation: QBH82098.1
MH790633 Genomic DNA Translation: QBH82693.1
MH790638 Genomic DNA Translation: QBH83222.1
MK855052 Genomic DNA Translation: QJQ80770.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1AT3X-ray2.50A/B1-247[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...
PDBe-KBiSearch...

Protein family/group databases

MEROPSiS21.001

Miscellaneous databases

EvolutionaryTraceiQ69527

Family and domain databases

Gene3Di3.20.16.10, 1 hit
HAMAPiMF_04008, HSV_SCAF, 1 hit
InterProiView protein in InterPro
IPR035443, Herpes_virus_sf
IPR001847, Peptidase_S21
PfamiView protein in Pfam
PF00716, Peptidase_S21, 1 hit
PRINTSiPR00236, HSVCAPSIDP40

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ69527_HHV2
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q69527
Secondary accession number(s): A0A1U9ZDP7
, A0A1U9ZDS4, A0A1U9ZGT1, A0A1U9ZID6, A0A1U9ZIY9, A0A1U9ZK44, A0A1U9ZK49, A0A1U9ZKU5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: January 19, 2022
This is version 93 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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