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Entry version 50 (11 Dec 2019)
Sequence version 1 (11 Oct 2004)
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Protein

Protein Ycf2

Gene

ycf2-A

more
Organism
Panax ginseng (Korean ginseng)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable ATPase of unknown function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi1442 – 1449ATPUniRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein Ycf2UniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ycf2-AUniRule annotation
ORF Names:PSC0883
AND
Name:ycf2-BUniRule annotation
ORF Names:PSC1477
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlastid; Chloroplast
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPanax ginseng (Korean ginseng)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4054 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsApialesAraliaceaePanax

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002230631 – 2110Protein Ycf2Add BLAST2110

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q68RU4

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the Ycf2 family.UniRule annotation

Family and domain databases

HAMAP database of protein families

More...
HAMAPi
MF_01330, Ycf2, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003593, AAA+_ATPase
IPR003959, ATPase_AAA_core
IPR027417, P-loop_NTPase
IPR008543, Uncharacterised_Ycf2

The PANTHER Classification System

More...
PANTHERi
PTHR33078, PTHR33078, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00004, AAA, 1 hit
PF05695, DUF825, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00382, AAA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q68RU4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKGHQFKSWI FELREILREI KNSHYFLDSR TQFNSVGSFS HIFFHQERFI
60 70 80 90 100
KLFDPRIWSI LLSRNSQGST SNRYFTIKGV ILFVVAVLIY RINSRNMVER
110 120 130 140 150
KNLYLIGLLP IPMNSIGPRN DTLEESVGSS NINRLIVSLL YLPKGKKISE
160 170 180 190 200
SCFLNPKEST WVLPITKKCS MPESNWGSRW WRNWIGKKRD SSQLKGSSDQ
210 220 230 240 250
SRDPLDSISN EDSEYHTLIN QREIQQLKER SILWDPSFLQ TERTEIESDR
260 270 280 290 300
FPKCLSVYSS MSRLFTEREK QMINHLLPEE IEEFLGNPTR SVRSFFSDRW
310 320 330 340 350
SELHLGSNPT ERSTRDQKLL KKQQDLSFVP SRRSEKKEMV NIFKIITYLQ
360 370 380 390 400
NTVSIHPISS YPGCDMVPKD EPDMDSSNKI SFLNKNPFFD LFHLFHDRNR
410 420 430 440 450
GGYTLHHDFE SEERFQEMAD LFTLSITEPD LVYHKGFAFS IDSYGLDQKQ
460 470 480 490 500
FLNEVFDSRD ESKKKYLLAL PPFFYEENES FYRRIRKKWV RISCGNDLED
510 520 530 540 550
PKPKIVVFAS NNIMEAVNQY RLIRNLIQIQ YSTYGYIRNV LNRFFLMNRS
560 570 580 590 600
DRNFEYGIQR DQIGKDTLNH RTIMKYTINQ HFSNLKKSQK RWFDPLILIS
610 620 630 640 650
RTERSMNRDP DAYRYKWSNG SKNFQEHLEH FVSEQKSRFQ VVFDRLRINQ
660 670 680 690 700
YSIDWSEVID KKGLSKPFRF FLSKLLFFLS NSLPFFFVSF GNIPIHRSEI
710 720 730 740 750
YIYELKGPND QLCNQLLESI GLQIVHLKKW KPFLLDLLDD HDTSQKSKFL
760 770 780 790 800
INGGTISPFL FNKIPKWMID SFHTRNNRRK SFDNTDSYFS TIFHDQDNWL
810 820 830 840 850
NPVKPFHRSS LISSFYKANR LRFLNNPHHF CFYCNKRFPF YVEKARINNS
860 870 880 890 900
DFTYGQFLNI LFIHNKIFSL CVGKKKHAFW GRDTISPIES QVSNIFIPND
910 920 930 940 950
FPQSGGDETY NLYKSFHFPS RSDPFVRRAI YSIADISGTP LTEGQIVNFE
960 970 980 990 1000
RTYCQPLSDM NLSDSEGKNS HQYLNFNSNM GLIHTPCSEK YLPSEKRKKR
1010 1020 1030 1040 1050
SLCLKKCVEK GQMYRTFQRD SAFSTLSKWN LFQTYMPWFL TSTGYKYLNF
1060 1070 1080 1090 1100
IFLDTFSDLL PILSLSSSQK FVSIFHDIMH GSDISWRILQ KKLCLLQWKW
1110 1120 1130 1140 1150
NLISEISSKC FHNLLLSEER IHRNNESPLI STHLRSPNVR EFLYSILFLL
1160 1170 1180 1190 1200
LVAGYLVCTH LLFVSWASSE LQTEFEKVKS LMIPSSMIEL RKLLDRYPTS
1210 1220 1230 1240 1250
EPNSFWLKNL FLVALEQLGD SLEEIRGSAS GGNMLLGGDP AYGVKSIRSK
1260 1270 1280 1290 1300
KKYLNINLID IIDLISIIPN PINRITFSRN TRHLSHTSKE IYSLIRKRKN
1310 1320 1330 1340 1350
VNGDWIDDKI ESWVANSDSI DDEEREFLVQ FSTLTTEKRI DQILLSLTHS
1360 1370 1380 1390 1400
DHLSKNDSGY QMIEQPGAIY LRYLVDIHKK YLMNYEFNTS CLAERRIFLA
1410 1420 1430 1440 1450
HYQTITYSQT SCGANSLNFP SHGKPFSLRL ALSPSRGILV IGSIGTGRSY
1460 1470 1480 1490 1500
LVKYLATNSY VPFITVFLNK FLDNKPKGFL IDDIDIDASD DIDASDDIDA
1510 1520 1530 1540 1550
SDDIDASDDI DRDLHTELEL LTMDMMPEID RFYITLQFEL AKAMSPCIIW
1560 1570 1580 1590 1600
IPNIHDLDVN ESNYFSLGLL VNHLSRDCER CSTRNILVIA STHIPQKVDP
1610 1620 1630 1640 1650
ALIAPNKLNT CIKIRRLLIP QQRKHFFTLS YTRGFRLENK MFHTNGFGSI
1660 1670 1680 1690 1700
TMGSNARDLV ALTNEALSIS ITQKKSIIDT NTIRSALHRQ TWDLRSQVRS
1710 1720 1730 1740 1750
VQDHGILFYQ IGRAVAQNVL LSNCPIDPIS IYMKKKSCNE GDSYLYKWYF
1760 1770 1780 1790 1800
ELGTSMKKLT ILLYLLSCSA GSVAQDLWSL PRPDEKNGIT SYGLVENDSD
1810 1820 1830 1840 1850
LVHGLLEVEG ALVGSSRTEK DCSQFDNDRV TLLLRPEPRN PLDMMQNGSC
1860 1870 1880 1890 1900
SILDQRFLYE KNESEFEEGE GEGALDPQQI EEDLFNHIVW APRIWRPWGF
1910 1920 1930 1940 1950
LFDCIERPNE LGFPYWSRSF RGKRILYDEE DELQENDSEF LQSGTMQYQT
1960 1970 1980 1990 2000
RDRSSKEQGL FRISQFIWDP ADPLFFLFKD QPFVSVFSHR ELFADEEMSK
2010 2020 2030 2040 2050
GLLTSPTDPP TSIYKRWFIK KTQEKHFELL INRQRWFRTN SSLSNGSFRS
2060 2070 2080 2090 2100
NTLSESYQYL SNLFLSNGTL LDQMTKTLLR KRWLFPDEMK IGFMEQEKDF
2110
PFLSRKDMWP
Length:2,110
Mass (Da):247,038
Last modified:October 11, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1B863C318B1BE6B9
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY582139 Genomic DNA Translation: AAT98552.1
AY582139 Genomic DNA Translation: AAT98573.1

NCBI Reference Sequences

More...
RefSeqi
YP_087009.1, NC_006290.1
YP_087028.1, NC_006290.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
3021533
3021535

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY582139 Genomic DNA Translation: AAT98552.1
AY582139 Genomic DNA Translation: AAT98573.1
RefSeqiYP_087009.1, NC_006290.1
YP_087028.1, NC_006290.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiQ68RU4

Genome annotation databases

GeneIDi3021533
3021535

Family and domain databases

HAMAPiMF_01330, Ycf2, 1 hit
InterProiView protein in InterPro
IPR003593, AAA+_ATPase
IPR003959, ATPase_AAA_core
IPR027417, P-loop_NTPase
IPR008543, Uncharacterised_Ycf2
PANTHERiPTHR33078, PTHR33078, 2 hits
PfamiView protein in Pfam
PF00004, AAA, 1 hit
PF05695, DUF825, 2 hits
SMARTiView protein in SMART
SM00382, AAA, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYCF2_PANGI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q68RU4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 21, 2005
Last sequence update: October 11, 2004
Last modified: December 11, 2019
This is version 50 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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