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Entry version 83 (08 May 2019)
Sequence version 2 (15 Jan 2008)
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Protein

Protein strawberry notch homolog 1

Gene

Sbno1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Miscellaneous

Expression is down-regulated in Reln-null embryos. Expression in P19 cell line was up-regulated by treatment with Reln.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein strawberry notch homolog 1
Short name:
mSno1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Sbno1
Synonyms:Sno1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:2384298 Sbno1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003145561 – 1390Protein strawberry notch homolog 1Add BLAST1390

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei146PhosphoserineBy similarity1
Modified residuei147N6-acetyllysineBy similarity1
Modified residuei160PhosphoserineBy similarity1
Modified residuei212PhosphoserineBy similarity1
Modified residuei411N6-acetyllysineBy similarity1
Modified residuei690PhosphoserineCombined sources1
Modified residuei691PhosphoserineCombined sources1
Modified residuei695PhosphoserineCombined sources1
Modified residuei751PhosphoserineBy similarity1
Modified residuei752PhosphoserineBy similarity1
Modified residuei765PhosphoserineCombined sources1
Modified residuei791PhosphoserineCombined sources1
Modified residuei812PhosphoserineBy similarity1
Modified residuei1219N6-acetyllysineBy similarity1
Modified residuei1383PhosphoserineBy similarity1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q689Z5

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q689Z5

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q689Z5

PRoteomics IDEntifications database

More...
PRIDEi
Q689Z5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q689Z5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q689Z5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed in brain and testis. Expressed in the hippocampus, olfactory bulb, and cerebellum. Low expression detected in lung, heart, liver, skin, colon and kidney.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

At 11 dpc expressed throughout the entire neuroepithelium. In the developing brain, expressed in the forebrain, tectum, cerebellum, striatum and olfactory bulb. At 15.5 dpc expressed in the cortex; the dorsal part of the telencephalon becomes laminated, and expression is observed in the upper and ventricular layers. At 18.5 dpc expression in the ventricular zone is weak.1 Publication

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q689Z5, 1 interactor

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000066808

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q689Z5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili840 – 867Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi781 – 790Poly-Lys10

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the SBNO family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1513 Eukaryota
ENOG410XQ7Q LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q689Z5

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q689Z5

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027417 P-loop_NTPase
IPR026937 SBNO_Helicase_C_dom
IPR026741 SNO
IPR039187 SNO_AAA

The PANTHER Classification System

More...
PANTHERi
PTHR12706 PTHR12706, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13872 AAA_34, 1 hit
PF13871 Helicase_C_4, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 10 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q689Z5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MVEPGQDLLL AALSESGISP NDLFDVDGGD AGLATPTPPS VQQSVPLSAL
60 70 80 90 100
ELGLETEAAV PVKQEPEPMS TPALLNVRQP PSTTTFVLNQ INQLPTLGST
110 120 130 140 150
IVMTKTPPAT TNRQTITLTK FIQTTANTRP SVSAPAVRNA MPAAPSKDQV
160 170 180 190 200
QLKDLLKNNS LNELMKLKPP ANIAQPVATA ATDVSNGAVK KESSNKEVAR
210 220 230 240 250
IWINDMKMRS FSPTMKVPVV KEEDEPEEED EEEMGHAETY AEYMPIKLKI
260 270 280 290 300
GLRHPDAVVE TSSLSSVTPP DVWYKTSISE ETIDNGWLSA LQLEAVTYAA
310 320 330 340 350
QQHETFLPNG DRAGFLIGDG AGVGKGRTIA GIIYENYLLS RKRALWFSVS
360 370 380 390 400
NDLKYDAERD LRDIGAKNIL VHSLNKFKYG KISSKHNGSV KKGVIFATYS
410 420 430 440 450
SLIGESQSGG KYKTRLKQLL HWCGDDFDGV IVFDECHKAK NLCPVGSSKP
460 470 480 490 500
TKTGLAVLEL QNKLPKARVV YASATGASEP RNMAYMNRLG IWGEGTPFRE
510 520 530 540 550
FSDFIQAVER RGVGAMEIVA MDMKLRGMYI ARQLSFTGVT FKIEEVLLSQ
560 570 580 590 600
SYVKMYNKAV KLWVIARERF QQAADLIDAE QRMKKSMWGQ FWSAHQRFFK
610 620 630 640 650
YLCIASKVKR VVQLAREEIK NGKCVVIGLQ STGEARTLEA LEEGGGELND
660 670 680 690 700
FVSTAKGVLQ SLIEKHFPAP DRKKLYSLLG IDLTAPSNNS SPRDSPCKEN
710 720 730 740 750
KIKKRKGEEI TREAKKARKV GGLTGSSSDD SGSESVSDND ESDYESSKNM
760 770 780 790 800
SSGDDDDFNP FRDESSEDNE DDPWLIRKDH KKSKDKKKKK SIDPDSIQSA
810 820 830 840 850
LLASGLGSKR PSFSSAPVIS PASNSAPANS NSNSNSSLVT SQDAVERAQQ
860 870 880 890 900
MKKDLLDKLE KLAEDLPPNT LDELIDELGG PENVAEMTGR KGRVVSNDDG
910 920 930 940 950
SISYESRSEL DVPVEILNIT EKQRFMDGDK NIAIISEAAS SGISLQADRR
960 970 980 990 1000
AKNQRRRVHM TLELPWSADR AIQQFGRTHR SNQVTAPEYV FLISELAGEQ
1010 1020 1030 1040 1050
RFASIVAKRL EGLGALTHGD RRATESRDLS RFNFDNKYGR NALEIVMKSI
1060 1070 1080 1090 1100
VNLDSPMVSP PPDYPGEFFK DVRQGLIGVG LINVEDRSGI LTLDKDYNNI
1110 1120 1130 1140 1150
GKFLNRILGM EVHQQNALFQ YFADTLTAVV QNAKKSGRYD MGILDLGSGD
1160 1170 1180 1190 1200
EKVRKSDVKK FLTPGYSTSG HVELYTISVE RGMSWEEATK IWAELTGPDD
1210 1220 1230 1240 1250
GFYLSLQIRN NKKTAILVKE VNPKKKLFLI YRPNTGKQLK LEIYADLKKK
1260 1270 1280 1290 1300
YKKVVSDDAL VHWLDQYNSS ADTCTHAYWR GNCKKASLGL VCEIGLRCRT
1310 1320 1330 1340 1350
YYVLCGSVLS VWTKVEGVLA SVSGTNVKMQ IVRLRTEDGQ RIVGLIIPAN
1360 1370 1380 1390
CVSPLVNLLS TSDQSQQLAV QQKQLWQQHH PQSITNLSNL
Length:1,390
Mass (Da):153,738
Last modified:January 15, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD811435E1E72CE02
GO
Isoform 2 (identifier: Q689Z5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     79-79: Q → QQ

Show »
Length:1,391
Mass (Da):153,866
Checksum:iEEF09F7AC61617C7
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 10 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B2RRI2B2RRI2_MOUSE
Protein strawberry notch homolog 1
Sbno1
1,391Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7CVW0F7CVW0_MOUSE
Protein strawberry notch homolog 1
Sbno1
1,390Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JEM3A0A0G2JEM3_MOUSE
Protein strawberry notch homolog 1
Sbno1
785Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JGC7A0A0G2JGC7_MOUSE
Protein strawberry notch homolog 1
Sbno1
755Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JGI0A0A0G2JGI0_MOUSE
Protein strawberry notch homolog 1
Sbno1
92Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q3TMM7Q3TMM7_MOUSE
Protein strawberry notch homolog 1
Sbno1
663Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JF11A0A0G2JF11_MOUSE
Protein strawberry notch homolog 1
Sbno1
211Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JDL6A0A0G2JDL6_MOUSE
Protein strawberry notch homolog 1
Sbno1
133Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JFU7A0A0G2JFU7_MOUSE
Protein strawberry notch homolog 1
Sbno1
263Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0G2JG63A0A0G2JG63_MOUSE
Protein strawberry notch homolog 1
Sbno1
242Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAI06157 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti13L → S in BAD38625 (PubMed:17045962).Curated1
Sequence conflicti22D → G in BAD38625 (PubMed:17045962).Curated1
Sequence conflicti179T → A in BAD38625 (PubMed:17045962).Curated1
Sequence conflicti496T → A in BAD38625 (PubMed:17045962).Curated1
Sequence conflicti735S → P in BAD38625 (PubMed:17045962).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_03029979Q → QQ in isoform 2. 2 Publications1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AB188811 mRNA Translation: BAD38625.1
AK077133 mRNA Translation: BAC36636.1
BC106156 mRNA Translation: AAI06157.1 Sequence problems.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS39280.1 [Q689Z5-2]

Genome annotation databases

UCSC genome browser

More...
UCSCi
uc008zpr.2 mouse [Q689Z5-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB188811 mRNA Translation: BAD38625.1
AK077133 mRNA Translation: BAC36636.1
BC106156 mRNA Translation: AAI06157.1 Sequence problems.
CCDSiCCDS39280.1 [Q689Z5-2]

3D structure databases

SMRiQ689Z5
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ689Z5, 1 interactor
STRINGi10090.ENSMUSP00000066808

PTM databases

iPTMnetiQ689Z5
PhosphoSitePlusiQ689Z5

Proteomic databases

EPDiQ689Z5
jPOSTiQ689Z5
PaxDbiQ689Z5
PRIDEiQ689Z5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc008zpr.2 mouse [Q689Z5-1]

Organism-specific databases

MGIiMGI:2384298 Sbno1

Phylogenomic databases

eggNOGiKOG1513 Eukaryota
ENOG410XQ7Q LUCA
InParanoidiQ689Z5
PhylomeDBiQ689Z5

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
Sbno1 mouse

Protein Ontology

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PROi
PR:Q689Z5

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR026937 SBNO_Helicase_C_dom
IPR026741 SNO
IPR039187 SNO_AAA
PANTHERiPTHR12706 PTHR12706, 1 hit
PfamiView protein in Pfam
PF13872 AAA_34, 1 hit
PF13871 Helicase_C_4, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSBNO1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q689Z5
Secondary accession number(s): Q3KQK3, Q8BVN5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: May 8, 2019
This is version 83 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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