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UniProtKB - Q688X7 (Q688X7_ORYSJ)

Entry version 99 (07 Oct 2020)
Sequence version 1 (11 Oct 2004)
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Protein
Submitted name:

Os05g0562400 protein

Gene

Os05g0562400

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscriptionARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Os05g0562400 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os05g0562400Imported
ORF Names:OSNPB_050562400Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q688X7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q688X7, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4530.OS05T0562400-01

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QQYM, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_001241_0_1_1

Identification of Orthologs from Complete Genome Data

More...OMAi		WKMQISD

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR007759, Asxl_HARE-HTH
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02791, DDT, 1 hit
PF05066, HARE-HTH, 1 hit
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00571, DDT, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50827, DDT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q688X7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLNRKREEQV RREMERNDRE RRKEEERLLR EKQKEEERFQ REQRREHKRM 
        60         70         80         90        100
EKYLLKQSLR AEKIRQKEEL RKEKEAARQK AANERATARR IAREYMELME 
       110        120        130        140        150
DERLELMELV SRSKGLPSML SLDSDTLQQL DSFRGMLRQF PSEIVRLKVP 
       160        170        180        190        200
FSIKPWTSSE DNIGNLLMVW KFFITFADVL GIPSFTLDEF VQSLHDYDSR 
       210        220        230        240        250
LLGELHVALL KSIIKDIEDV ARTPSVASGM TANPGGGHPQ IVEGAYDWGF 
       260        270        280        290        300
NILAWQRHLN LLTWPEILRQ FGLSAGLGPQ LRKRNAENVN NHDDNEGRNG 
       310        320        330        340        350
EDVISILRSG SAAVNAAAKM KERGYGNRRR SRHRLTPGTV KFAAFHVLSL 
       360        370        380        390        400
EGSQGLTILE VAEKIQKSGL RDLTTSKTPE ASISAALSRD SKLFERTAPS 
       410        420        430        440        450
TYCVKTPYRK DPADSEAVLA AAREKIRVFQ NTISECEEVE KDVDDAERDE 
       460        470        480        490        500
DSECDDADDD PDGDEVNIEE KDVKTSLVKA QDGGMPTAVG DIKKETNSIV 
       510        520        530        540        550
NSLTTPLIHT KSSESSSLRT LDKSVQVRTT SDLPAEISSD NHEGASDSAQ 
       560        570        580        590        600
DAEIDESNQG ESWVQGLAEG DYCDLSVEER LNALVALIGV ATEGNSIRAV 
       610        620        630        640        650
LEERLEAASA LKKQMWAEAQ LDKRRSREEF SSKMQYDSGM GLKTDVDQQN 
       660        670        680        690        700
TLAESNLTPV HNLVKDSNGN GSLVNNELPV DQQSQPNACS VVHERNGVRQ 
       710        720        730        740        750
EFSANPENLS GQQYVTSEKT RSQLKSYIGH KAEQLHVYRS LPLGQDRRRN 
       760        770        780        790        800
RYWQFSTSAS PDDPGSGRIF FESRDGYWRL IDSIETFDAL VSSLDTRGIR 
       810        820        830        840        850
ESHLHSMLQS IEPTFKEAIG RKRCASIEPS AGRVLKNGTS EIISPNHSNE 
       860        870        880        890        900
FGSPCSTLSG VATDSAMAYS DSFRIELGRN DVEKTAISER ADLFIKWMWK 
       910        920        930        940        950
ECNNHQPTCA MKHGKKRCSE LIQCCDFCYQ IYLAEETHCA SCHKTFKSIH 
       960        970        980        990       1000
NISEHSSQCE EKRRTDPNWK MQISDYSVPV GLRLLKLLLA TVEASVPAEA 
      1010       1020       1030       1040       1050
LEPFWTDVYR KSWGVKLYST SSTKEVFEML TILEGAIRRD FLSSDFETTT 
      1060       1070       1080       1090       1100
ELLNLSTQDS ASRNTVPRSG SADVLPWVPD TVAAVVLRLL DLDSAISYTL 
      1110       1120       1130       1140       1150
RQKVGSNKER GAGEFMKLPP RYTPAKTKQE TEPMGTGFDR QETWLTPSNG 
      1160       1170       1180       1190       1200
RGGRGGRGRG SRGGSRGGRS RSRGGKVPRG ISSSPKIEFR GYSASAVSSE 
      1210       1220       1230       1240       1250
KAPRKYARRG RNRGRGRGLR TVRPRQPSDI GARSIPKPNL LGSFSMLRNA 
      1260       1270       1280       1290       1300
KHTTAMESPQ SSGAEEWGLE RRPSYVKDDE DNSASQSEES SEENSEPMNE 
      1310       1320       1330       1340       1350
EYDELLPDYS RDNSGSSPLQ MMDDGSDDNE EDAEGDEDGE EDGEDYDAEQ 
      1360       1370       1380       1390 
HVDEDNDDAE MGEDDVEDND DGDGGGGGAE NGDEDEDGTS YSSEYSE
Length:1,397
Mass (Da):156,442
Last modified:October 11, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i33A768390FC4DB0B
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0WQK9A0A0P0WQK9_ORYSJ
Os05g0562400 protein
Os05g0562400, OSNPB_050562400
98Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AP014961 Genomic DNA Translation: BAS95334.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Os05t0562400-01; Os05t0562400-01; Os05g0562400

Gramene; a comparative resource for plants

More...Gramenei		Os05t0562400-01; Os05t0562400-01; Os05g0562400

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP014961 Genomic DNA Translation: BAS95334.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi4530.OS05T0562400-01

Proteomic databases

PRIDEiQ688X7

Genome annotation databases

EnsemblPlantsiOs05t0562400-01; Os05t0562400-01; Os05g0562400
GrameneiOs05t0562400-01; Os05t0562400-01; Os05g0562400

Phylogenomic databases

eggNOGiENOG502QQYM, Eukaryota
HOGENOMiCLU_001241_0_1_1
OMAiWKMQISD

Gene expression databases

ExpressionAtlasiQ688X7, baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR007759, Asxl_HARE-HTH
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom
PfamiView protein in Pfam
PF02791, DDT, 1 hit
PF05066, HARE-HTH, 1 hit
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit
SMARTiView protein in SMART
SM00571, DDT, 1 hit
PROSITEiView protein in PROSITE
PS50827, DDT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ688X7_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q688X7
Secondary accession number(s): Q0DFY8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: October 7, 2020
This is version 99 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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