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Entry version 101 (12 Aug 2020)
Sequence version 2 (03 Oct 2006)
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Protein

40S ribosomal protein S29

Gene

RPS29A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi21ZincSequence analysis1
Metal bindingi24ZincSequence analysis1
Metal bindingi39ZincSequence analysis1
Metal bindingi42ZincSequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
40S ribosomal protein S29
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPS29A
Ordered Locus Names:At3g43980
ORF Names:T15B3.120
AND
Name:RPS29B
Ordered Locus Names:At3g44010
ORF Names:T15B3.150
AND
Name:RPS29C
Ordered Locus Names:At4g33865
ORF Names:F17I5.3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 3, Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G43980
AT3G44010
AT4G33865

The Arabidopsis Information Resource

More...
TAIRi
locus:2097119, AT3G43980
locus:2097154, AT3G44010
locus:505006550, AT4G33865

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002505391 – 5640S ribosomal protein S29Add BLAST56

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q680P8

PRoteomics IDEntifications database

More...
PRIDEi
Q680P8

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
237024

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q680P8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q680P8, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q680P8, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
8835, 1 interactor
8838, 1 interactor

Protein interaction database and analysis system

More...
IntActi
Q680P8, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT4G33865.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q680P8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3506, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_177289_1_1_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q680P8

KEGG Orthology (KO)

More...
KOi
K02980

Identification of Orthologs from Complete Genome Data

More...
OMAi
HCFREIA

Database of Orthologous Groups

More...
OrthoDBi
1635465at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q680P8

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
4.10.830.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR039744, 40S_S29/30S_S14z
IPR001209, Ribosomal_S14
IPR043140, Ribosomal_S14/S29

The PANTHER Classification System

More...
PANTHERi
PTHR12010, PTHR12010, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00253, Ribosomal_S14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q680P8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGHSNVWNSH PKKYGPGSRL CRVCGNSHGL IRKYGLNCCR QCFRSNAKEI

GFIKYR
Length:56
Mass (Da):6,429
Last modified:October 3, 2006 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5789A29F184A8F89
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti46N → K in BAD43494 (Ref. 6) Curated1
Sequence conflicti46N → K in BAD43582 (Ref. 6) Curated1
Sequence conflicti46N → K in BAD43833 (Ref. 6) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL163975 Genomic DNA Translation: CAB88126.1
AL163975 Genomic DNA Translation: CAB88129.1
AL031032 Genomic DNA No translation available.
CP002686 Genomic DNA Translation: AEE77851.1
CP002686 Genomic DNA Translation: AEE77854.1
CP002686 Genomic DNA Translation: ANM65988.1
CP002687 Genomic DNA Translation: AEE86285.1
AK118617 mRNA Translation: BAC43215.1
AF324695 mRNA Translation: AAG40046.1
AF326888 mRNA Translation: AAG41470.1
AF349528 mRNA Translation: AAK15575.1
AF361851 mRNA Translation: AAK32863.1
AY129480 mRNA Translation: AAM91066.1
BT002766 mRNA Translation: AAO22594.1
BT004344 mRNA Translation: AAO42338.1
AF325031 mRNA Translation: AAG40383.1
AK175132 mRNA Translation: BAD42895.1
AK175152 mRNA Translation: BAD42915.1
AK175172 mRNA Translation: BAD42935.1
AK175173 mRNA Translation: BAD42936.1
AK175283 mRNA Translation: BAD43046.1
AK175731 mRNA Translation: BAD43494.1
AK175739 mRNA Translation: BAD43502.1
AK175819 mRNA Translation: BAD43582.1
AK175918 mRNA Translation: BAD43681.1
AK176060 mRNA Translation: BAD43823.1
AK176070 mRNA Translation: BAD43833.1
AK176294 mRNA Translation: BAD44057.1
AK176295 mRNA Translation: BAD44058.1
AK176322 mRNA Translation: BAD44085.1
AK176332 mRNA Translation: BAD44095.1
AK176439 mRNA Translation: BAD44202.1
AK176861 mRNA Translation: BAD44624.1
AK228020 mRNA Translation: BAE99982.1
BT028875 mRNA Translation: ABI49422.1
AY088245 mRNA Translation: AAM65785.1
AY086767 mRNA Translation: AAM63818.1
AY086371 mRNA Translation: AAM64438.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T48952

NCBI Reference Sequences

More...
RefSeqi
NP_001319679.1, NM_001339120.1
NP_189984.1, NM_114266.2
NP_189987.1, NM_114269.3
NP_567938.1, NM_119544.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G43980.1; AT3G43980.1; AT3G43980
AT3G44010.1; AT3G44010.1; AT3G44010
AT3G44010.2; AT3G44010.2; AT3G44010
AT4G33865.1; AT4G33865.1; AT4G33865

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
823515
823518
829529

Gramene; a comparative resource for plants

More...
Gramenei
AT3G43980.1; AT3G43980.1; AT3G43980
AT3G44010.1; AT3G44010.1; AT3G44010
AT3G44010.2; AT3G44010.2; AT3G44010
AT4G33865.1; AT4G33865.1; AT4G33865

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G43980
ath:AT3G44010
ath:AT4G33865

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL163975 Genomic DNA Translation: CAB88126.1
AL163975 Genomic DNA Translation: CAB88129.1
AL031032 Genomic DNA No translation available.
CP002686 Genomic DNA Translation: AEE77851.1
CP002686 Genomic DNA Translation: AEE77854.1
CP002686 Genomic DNA Translation: ANM65988.1
CP002687 Genomic DNA Translation: AEE86285.1
AK118617 mRNA Translation: BAC43215.1
AF324695 mRNA Translation: AAG40046.1
AF326888 mRNA Translation: AAG41470.1
AF349528 mRNA Translation: AAK15575.1
AF361851 mRNA Translation: AAK32863.1
AY129480 mRNA Translation: AAM91066.1
BT002766 mRNA Translation: AAO22594.1
BT004344 mRNA Translation: AAO42338.1
AF325031 mRNA Translation: AAG40383.1
AK175132 mRNA Translation: BAD42895.1
AK175152 mRNA Translation: BAD42915.1
AK175172 mRNA Translation: BAD42935.1
AK175173 mRNA Translation: BAD42936.1
AK175283 mRNA Translation: BAD43046.1
AK175731 mRNA Translation: BAD43494.1
AK175739 mRNA Translation: BAD43502.1
AK175819 mRNA Translation: BAD43582.1
AK175918 mRNA Translation: BAD43681.1
AK176060 mRNA Translation: BAD43823.1
AK176070 mRNA Translation: BAD43833.1
AK176294 mRNA Translation: BAD44057.1
AK176295 mRNA Translation: BAD44058.1
AK176322 mRNA Translation: BAD44085.1
AK176332 mRNA Translation: BAD44095.1
AK176439 mRNA Translation: BAD44202.1
AK176861 mRNA Translation: BAD44624.1
AK228020 mRNA Translation: BAE99982.1
BT028875 mRNA Translation: ABI49422.1
AY088245 mRNA Translation: AAM65785.1
AY086767 mRNA Translation: AAM63818.1
AY086371 mRNA Translation: AAM64438.1
PIRiT48952
RefSeqiNP_001319679.1, NM_001339120.1
NP_189984.1, NM_114266.2
NP_189987.1, NM_114269.3
NP_567938.1, NM_119544.4

3D structure databases

SMRiQ680P8
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi8835, 1 interactor
8838, 1 interactor
IntActiQ680P8, 1 interactor
STRINGi3702.AT4G33865.1

PTM databases

iPTMnetiQ680P8

Proteomic databases

PaxDbiQ680P8
PRIDEiQ680P8
ProteomicsDBi237024

Genome annotation databases

EnsemblPlantsiAT3G43980.1; AT3G43980.1; AT3G43980
AT3G44010.1; AT3G44010.1; AT3G44010
AT3G44010.2; AT3G44010.2; AT3G44010
AT4G33865.1; AT4G33865.1; AT4G33865
GeneIDi823515
823518
829529
GrameneiAT3G43980.1; AT3G43980.1; AT3G43980
AT3G44010.1; AT3G44010.1; AT3G44010
AT3G44010.2; AT3G44010.2; AT3G44010
AT4G33865.1; AT4G33865.1; AT4G33865
KEGGiath:AT3G43980
ath:AT3G44010
ath:AT4G33865

Organism-specific databases

AraportiAT3G43980
AT3G44010
AT4G33865
TAIRilocus:2097119, AT3G43980
locus:2097154, AT3G44010
locus:505006550, AT4G33865

Phylogenomic databases

eggNOGiKOG3506, Eukaryota
HOGENOMiCLU_177289_1_1_1
InParanoidiQ680P8
KOiK02980
OMAiHCFREIA
OrthoDBi1635465at2759
PhylomeDBiQ680P8

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q680P8

Gene expression databases

ExpressionAtlasiQ680P8, baseline and differential
GenevisibleiQ680P8, AT

Family and domain databases

Gene3Di4.10.830.10, 1 hit
InterProiView protein in InterPro
IPR039744, 40S_S29/30S_S14z
IPR001209, Ribosomal_S14
IPR043140, Ribosomal_S14/S29
PANTHERiPTHR12010, PTHR12010, 1 hit
PfamiView protein in Pfam
PF00253, Ribosomal_S14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRS29_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q680P8
Secondary accession number(s): Q9LDT9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: October 3, 2006
Last modified: August 12, 2020
This is version 101 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
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