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Entry version 51 (11 Dec 2019)
Sequence version 1 (11 Oct 2004)
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Protein
Submitted name:

Probable conjugal transfer protein TraA

Gene
N/A
Organism
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Probable conjugal transfer protein TraAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pAgK84Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri358 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini5 – 88MobA_MobLInterPro annotationAdd BLAST84
Domaini818 – 901Bep_C_terminalInterPro annotationAdd BLAST84

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni218 – 242DisorderedSequence analysisAdd BLAST25
Regioni754 – 795DisorderedSequence analysisAdd BLAST42
Regioni1022 – 1044DisorderedSequence analysisAdd BLAST23

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili93 – 113Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi775 – 789PolyampholyteSequence analysisAdd BLAST15

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02768 TraA_Ti, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q676H0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMTTRALSED SLGDKTNLER KNSSLLASGI ATTDMQLREI RQSWEHIANK
60 70 80 90 100
QLAREGLDIR IDHRSHSERG LEIEPTEHMG VHATQMQRQG MDVERMRLDE
110 120 130 140 150
EAAQRNAELI RENPEQVLAL ITAEKSVFDR HDIARTLHRY INDDAHAYQN
160 170 180 190 200
AFAAVMASPA LVQLQSERKD AETGEILKAR YSTREMIETE SGMMQAAERL
210 220 230 240 250
HQAQNHGVDR RHVTRAIGRQ DEAIQRSAGG TSAAGDPSAR LSDEQRQAIE
260 270 280 290 300
YVTGPERIAA VVGFAGAGKS TMLAAAREAW EAQGYRVHGA ALAGKAAEGL
310 320 330 340 350
EESSGIASRT LASWSRGWEN PHSGDRYALG RGDVFVIDEA GMVGSRQLAH
360 370 380 390 400
FIGEAEQRGA KIVLVGDHQQ LQAISAGAPF RILAERLGHV ELSEIRRQRQ
410 420 430 440 450
GWQREASVAF ATHRTAEGLS AYRDNGNISF TETGDEARAA IVQDYLADRE
460 470 480 490 500
QRPDGTRVAM AHRRADVRAI NEDIRSGLQQ RGELAQGNVP AVGSDAVALT
510 520 530 540 550
FQTNDGSREF APGDRIVFLE NSRDLGVKNG MLGTVEHVES GRIIAQLDGR
560 570 580 590 600
GGDSVSIPMD TYQAIDHGYA TTIHKNQGAT VDRAFVLAST TMDQHLTYVA
610 620 630 640 650
MTRHRDGAQL YAAQEEFTNA GRLVDHGTAP YEHNPEARES YFVTLENDKG
660 670 680 690 700
EQRTLWGVDL KRALQEAQPA IGDKIGLQHE GATPVTLPDG TQTQRNSWRV
710 720 730 740 750
VEGGELAYSQ LEHRLSRSGA KETTLDYVRD FAERRGIAEA FGFKSEIEIP
760 770 780 790 800
RERAERQTLG RGSSQKVGAD LAQDLSADPR EDLQRRQSRT ATEKPAPLVP
810 820 830 840 850
AITRHDRSIE DVAREKAMPA IDHGFEAVES VARHVFRDPA EVASRLRTAI
860 870 880 890 900
TEKEGNGKVM AKAMAEQPER FGELRGKSGL FGDNKERKAA FHYAKAVASH
910 920 930 940 950
IGYTSEHWER RLGEERKSEQ WQREKRDVVE VPGLTPRSAE ILAQVDKVST
960 970 980 990 1000
NKRDQLIDEL RSTPDGQAAL EEAKLVVNAL TRRFGHSDPR DFAKELERRP
1010 1020 1030 1040
ELTKQAEQIK IAARMVERTR MAELSRDHTL KQQLTRSQGL GLSR
Length:1,044
Mass (Da):115,887
Last modified:October 11, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i366414F5A21048A8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY442931 Genomic DNA Translation: AAS02139.1

NCBI Reference Sequences

More...
RefSeqi
WP_011199114.1, NC_006277.2
YP_086778.1, NC_006277.2

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
3021240

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY442931 Genomic DNA Translation: AAS02139.1
RefSeqiWP_011199114.1, NC_006277.2
YP_086778.1, NC_006277.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

GeneIDi3021240

Family and domain databases

InterProiView protein in InterPro
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti
PfamiView protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR02768 TraA_Ti, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ676H0_RHIRD
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q676H0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: December 11, 2019
This is version 51 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

PlasmidImported
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