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UniProtKB - Q66012 (CAPSD_CFMVN)
Protein
Capsid protein
Gene
ORF3
Organism
Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995) (CfMV)
Status
Functioni
Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 30 nm in diameter, and consisting of 180 capsid proteins. Each icosahedral unit contains three protein subunits (Potential).
CuratedGO - Molecular functioni
- RNA binding Source: UniProtKB-KW
- structural molecule activity Source: InterPro
Keywordsi
Molecular function | RNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Capsid proteinShort name: CP Alternative name(s): Coat protein Protein P4 |
Gene namesi | ORF Names:ORF3 |
Organismi | Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995) (CfMV) |
Taxonomic identifieri | 1005059 [NCBI] |
Taxonomic lineagei | Viruses › Riboviria › Orthornavirae › Pisuviricota › Pisoniviricetes › Sobelivirales › Solemoviridae › Sobemovirus › |
Virus hosti | Dactylis glomerata (Orchard grass) (Cock's-foot grass) [TaxID: 4509] Triticum aestivum (Wheat) [TaxID: 4565] |
Proteomesi |
|
Subcellular locationi
- Virion Curated
Keywords - Cellular componenti
Capsid protein, T=3 icosahedral capsid protein, VirionPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000409863 | 1 – 254 | Capsid proteinAdd BLAST | 254 |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 61 | R domain, interaction with RNABy similarityAdd BLAST | 61 | |
Regioni | 1 – 53 | DisorderedSequence analysisAdd BLAST | 53 | |
Regioni | 62 – 245 | S domain, virion shellBy similarityAdd BLAST | 184 | |
Regioni | 246 – 254 | P domain, projectingBy similarity | 9 |
Sequence similaritiesi
Belongs to the icosahedral plant coat protein family.Curated
Family and domain databases
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR000937, Capsid_prot_S-dom_vir IPR029053, Viral_coat |
Pfami | View protein in Pfam PF00729, Viral_coat, 1 hit |
PROSITEi | View protein in PROSITE PS00555, ICOSAH_VIR_COAT_S, 1 hit |
i Sequence
Sequence statusi: Complete.
Q66012-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MMVRKGAATK APQQPKPKAQ QQPGGRRRRR GRSMEPVSRP LNPPAAVGST
60 70 80 90 100
LKAGRGRTAG VSDWFDTGMI TSYLGGFQRT AGTTDSQVFI VSPAALDRVG
110 120 130 140 150
TIAKAYALWR PKHWEIVYLP RCSTQTDGSI EMGFLLDYAD SVPTNTRTMA
160 170 180 190 200
SSTSFTTSNV WGGGDGSSLL HTSVKSMGNA VTSALPCDEF SNKWFKLSWS
210 220 230 240 250
TPEESENAHL TDTYVPARFV VRSDFPVVTA DQPGHLWLRS RILLKGSVSP
STNL
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 174 | V → M in ABG73620 (PubMed:16732485).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | Z48630 Genomic RNA Translation: CAA88562.1 DQ680848 Genomic RNA Translation: ABG73620.1 |
RefSeqi | NP_941377.1, NC_002618.2 |
Genome annotation databases
GeneIDi | 2654594 |
KEGGi | vg:2654594 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | Z48630 Genomic RNA Translation: CAA88562.1 DQ680848 Genomic RNA Translation: ABG73620.1 |
RefSeqi | NP_941377.1, NC_002618.2 |
3D structure databases
SMRi | Q66012 |
ModBasei | Search... |
Genome annotation databases
GeneIDi | 2654594 |
KEGGi | vg:2654594 |
Family and domain databases
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR000937, Capsid_prot_S-dom_vir IPR029053, Viral_coat |
Pfami | View protein in Pfam PF00729, Viral_coat, 1 hit |
PROSITEi | View protein in PROSITE PS00555, ICOSAH_VIR_COAT_S, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | CAPSD_CFMVN | |
Accessioni | Q66012Primary (citable) accession number: Q66012 Secondary accession number(s): Q0PW23 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | June 28, 2011 |
Last sequence update: | November 1, 1996 | |
Last modified: | June 2, 2021 | |
This is version 63 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Viral Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Direct protein sequencing, Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families