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Protein

Coiled-coil domain-containing protein 93

Gene

ccdc93

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May be involved in copper-dependent atp7a trafficking between the trans-Golgi network and vesicles in the cell periphery.By similarity

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Coiled-coil domain-containing protein 93
Gene namesi
Name:ccdc93
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-5914327 ccdc93

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Endosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002346091 – 610Coiled-coil domain-containing protein 93Add BLAST610

Proteomic databases

PaxDbiQ640U7
PRIDEiQ640U7

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000032653

Structurei

3D structure databases

ProteinModelPortaliQ640U7
SMRiQ640U7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili229 – 467Sequence analysisAdd BLAST239
Coiled coili511 – 580Sequence analysisAdd BLAST70

Sequence similaritiesi

Belongs to the CCDC93 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG2701 Eukaryota
ENOG410XRRE LUCA
HOGENOMiHOG000230742
HOVERGENiHBG054413
InParanoidiQ640U7

Family and domain databases

InterProiView protein in InterPro
IPR039116 CCDC93
IPR019159 CCDC93_CC
PANTHERiPTHR16441 PTHR16441, 1 hit
PfamiView protein in Pfam
PF09762 KOG2701, 1 hit

Sequencei

Sequence statusi: Complete.

Q640U7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARGETPEV ETREDEEQGV KLAEILELLV AAGYFRARIK GLSPFDKVVG
60 70 80 90 100
GMTWCITTCN FDIDVDLLFQ ENSTIGQKIA LTEKIVSVLP KMKCPHRLEP
110 120 130 140 150
HQIQGLDFIH IFPVIQWLVK RAIETRQEMG DYIRSYSVSQ FHKEHSLPED
160 170 180 190 200
QDFELRREKT VRTLSETLDV YRPRRKYKRQ GGSSELMDEE SRVHSTLLEY
210 220 230 240 250
GRRYGLSKQM KPEKPEDRRV PVPQGLVGKG EVREEEEELR AEEELRIKAL
260 270 280 290 300
MTEMAATGME EGRLTASTVG QIVGLQSKEI KQMVSEYAEK QSELSAEDRA
310 320 330 340 350
EYLGAAQQHR RKVASLSKLI GQRKKLLDQL QEKASELQSG CGETRKQLTE
360 370 380 390 400
VTSHMEKLDQ ELSVLENMES KADPSVLQKL RDLVAQNESL KAQEQQFRSK
410 420 430 440 450
CREEMSRLQQ NIDGLKAAAT EHGEEKEQTQ AFEQQYKAER EKLQKIRLLL
460 470 480 490 500
ARRNREIAIL QRKIDEVPSR AELTQYQKRF IELYGQVSAT HKETKQFFTL
510 520 530 540 550
YNTLDDKKVY LEKEVNLLNS IHDNFQQAMA SPSARDQFLR QMEQIVDGIR
560 570 580 590 600
QSRNKMEKKK QENKMKRDQL NDEYLELLEK QRLYFKTVKE FKEECRKNET
610
LLSKMKGPTP
Length:610
Mass (Da):70,951
Last modified:October 25, 2004 - v1
Checksum:i9B4F7F68AD597AE3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC082492 mRNA Translation: AAH82492.1
RefSeqiNP_001008173.1, NM_001008172.1
UniGeneiStr.27180

Genome annotation databases

GeneIDi493535
KEGGixtr:493535

Similar proteinsi

Entry informationi

Entry nameiCCD93_XENTR
AccessioniPrimary (citable) accession number: Q640U7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: October 25, 2004
Last modified: July 18, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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