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UniProtKB - Q63JR7 (Q63JR7_BURPS)

Entry version 79 (07 Apr 2021)
Sequence version 1 (25 Oct 2004)
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Protein
Submitted name:

Putative sugar-binding protein

Gene

BPSS1649

Organism
Burkholderia pseudomallei (strain K96243)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BPSE272560:G1G3Q-5342-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative sugar-binding proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BPSS1649Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia pseudomallei (strain K96243)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri272560 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000605 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 30Sequence analysisAdd BLAST30
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500426727031 – 806Sequence analysisAdd BLAST776

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		272560.BPSS1649

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q63JR7

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini33 – 124Ricin B-type lectinInterPro annotationAdd BLAST92
Domaini127 – 268Ricin B-type lectinInterPro annotationAdd BLAST142

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG1572, Bacteria
COG3345, Bacteria

Identification of Orthologs from Complete Genome Data

More...OMAi		NTHAHIT

Family and domain databases

Conserved Domains Database

More...CDDi		cd02851, E_set_GO_C, 1 hit
cd00161, RICIN, 3 hits

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.130.10.80, 1 hit
2.60.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011043, Gal_Oxase/kelch_b-propeller
IPR037293, Gal_Oxidase_central_sf
IPR015202, GO-like_E_set
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR035992, Ricin_B-like_lectins
IPR000772, Ricin_B_lectin

Pfam protein domain database

More...Pfami		View protein in Pfam
PF09118, DUF1929, 1 hit
PF14200, RicinB_lectin_2, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00458, RICIN, 2 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50370, SSF50370, 2 hits
SSF50965, SSF50965, 1 hit
SSF81296, SSF81296, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50231, RICIN_B_LECTIN, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q63JR7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHFFRFAWRH GRYWLCLLIA SVLLPQGAAA AVTASYTDIV GADSGLCVST 
        60         70         80         90        100
AGNSSASGAG VVQTSCAGLS NTTWSFVPVG NRYHIVLQGS GLCLNVPGGS 
       110        120        130        140        150
LNSGTQLIQY ACQGNGQTND QWTVVAVGSS YRIVSASSGM CVNVSGASHA 
       160        170        180        190        200
SGAALIQYPC QGAGALNDQF NLYLPVVAAT NVTAANSNLC VSVNGGSTAA 
       210        220        230        240        250
GASIVQGTCS NQGATGWSLL PAGSGYHVVS QGTGQCLNVY GGYTTSGAPI 
       260        270        280        290        300
IQYPCQGDAQ TNDQWTLVPV GSKYRLISVS SGMCLNVSGG SLSPGAPLIQ 
       310        320        330        340        350
YPCQGANALN DQFSLSLPQT FPVTLPSAWS PVIPLPVNPI GIANAPNGKL 
       360        370        380        390        400
VMWSADQQLS FQNDVGSKAT QTQTAVFDPA TNTATQYLET SAGSDMFCTG 
       410        420        430        440        450
TAMLPDGRLL VNGGDSSPKT TLYDWTTNTW SAAATMNIAR GYQGDTLLSN 
       460        470        480        490        500
GSVLTLGGSW SGGQGGKTAE VWTNGGAWTL LPGVPETNIV GPDPQGIYRG 
       510        520        530        540        550
DNHLWLFAQG NGTVFHAGPS SQMNWISTAG GGSIQSAGMR GVDPFSINGT 
       560        570        580        590        600
ASLYDVGKIL KAGGAKSYQQ NGSVTTYASN SVYQIDITRG PNQPASVQRL 
       610        620        630        640        650
NGMTYQRAFA NSVILPNGSI VMIGGQSVPM PFTDTTAIMV PEIWDPATQR 
       660        670        680        690        700
FNLLKPMQTP RTYHSTAILM ADGRVFAGGG GQCGTGCAMN HLNAEILTPP 
       710        720        730        740        750
YLLNADGTPA PRPVITNAPA TAKLGATIAV STQGPVASFV LMRLSSVTHT 
       760        770        780        790        800
TNNDQRRIPL AIASSGGTSY QLAIPADPGV VLPGYYMLFA LNAQGVPSVS 

ASIRIS
Length:806
Mass (Da):83,187
Last modified:October 25, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6A5EC305851F8E97
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
BX571966 Genomic DNA Translation: CAH39123.1

NCBI Reference Sequences

More...RefSeqi		WP_004528930.1, NZ_CP009537.1
YP_111655.1, NC_006351.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAH39123; CAH39123; BPSS1649

Database of genes from NCBI RefSeq genomes

More...GeneIDi		56529939

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bps:BPSS1649

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|272560.51.peg.5042

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX571966 Genomic DNA Translation: CAH39123.1
RefSeqiWP_004528930.1, NZ_CP009537.1
YP_111655.1, NC_006351.1

3D structure databases

SMRiQ63JR7
ModBaseiSearch...

Protein-protein interaction databases

STRINGi272560.BPSS1649

Genome annotation databases

EnsemblBacteriaiCAH39123; CAH39123; BPSS1649
GeneIDi56529939
KEGGibps:BPSS1649
PATRICifig|272560.51.peg.5042

Phylogenomic databases

eggNOGiCOG1572, Bacteria
COG3345, Bacteria
OMAiNTHAHIT

Enzyme and pathway databases

BioCyciBPSE272560:G1G3Q-5342-MONOMER

Family and domain databases

CDDicd02851, E_set_GO_C, 1 hit
cd00161, RICIN, 3 hits
Gene3Di2.130.10.80, 1 hit
2.60.40.10, 1 hit
InterProiView protein in InterPro
IPR011043, Gal_Oxase/kelch_b-propeller
IPR037293, Gal_Oxidase_central_sf
IPR015202, GO-like_E_set
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR035992, Ricin_B-like_lectins
IPR000772, Ricin_B_lectin
PfamiView protein in Pfam
PF09118, DUF1929, 1 hit
PF14200, RicinB_lectin_2, 2 hits
SMARTiView protein in SMART
SM00458, RICIN, 2 hits
SUPFAMiSSF50370, SSF50370, 2 hits
SSF50965, SSF50965, 1 hit
SSF81296, SSF81296, 1 hit
PROSITEiView protein in PROSITE
PS50231, RICIN_B_LECTIN, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ63JR7_BURPS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q63JR7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: April 7, 2021
This is version 79 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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