UniProtKB - Q62952 (DPYL3_RAT)
Protein
Dihydropyrimidinase-related protein 3
Gene
Dpysl3
Organism
Rattus norvegicus (Rat)
Status
Functioni
Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.1 Publication
Caution
Lacks most of the conserved residues that are essential for binding the metal cofactor and hence for dihydropyrimidinase activity. Its enzyme activity is therefore unsure.Curated
GO - Molecular functioni
- chondroitin sulfate binding Source: RGD
- filamin binding Source: RGD
- hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Source: InterPro
- identical protein binding Source: UniProtKB
- phosphoprotein binding Source: RGD
- SH3 domain binding Source: RGD
GO - Biological processi
- actin crosslink formation Source: UniProtKB
- actin filament bundle assembly Source: UniProtKB
- cellular response to cytokine stimulus Source: UniProtKB
- negative regulation of cell migration Source: UniProtKB
- negative regulation of neuron projection development Source: UniProtKB
- nervous system development Source: RGD
- neuron development Source: RGD
- positive regulation of filopodium assembly Source: UniProtKB
- positive regulation of neuron projection development Source: RGD
- response to axon injury Source: UniProtKB
Enzyme and pathway databases
Reactomei | R-RNO-399956, CRMPs in Sema3A signaling |
Protein family/group databases
MEROPSi | M38.976 |
Names & Taxonomyi
Protein namesi | Recommended name: Dihydropyrimidinase-related protein 3Short name: DRP-3 Alternative name(s): Collapsin response mediator protein 4 Short name: CRMP-4 TOAD-64/Ulip/CRMP TUC-4b |
Gene namesi | Name:Dpysl3 Synonyms:Crmp4 |
Organismi | Rattus norvegicus (Rat) |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 2410, Dpysl3 |
Subcellular locationi
Other locations
- Cytoplasm 1 Publication
- growth cone 1 Publication
Note: Colocalizes with synaptic vesicle protein 2 in the central region of the growth cone.1 Publication
Cytoskeleton
- filamentous actin Source: UniProtKB
Cytosol
- cytosol Source: UniProtKB
Extracellular region or secreted
- extracellular space Source: RGD
Other locations
- cell body Source: UniProtKB
- growth cone Source: UniProtKB
- lamellipodium Source: UniProtKB
Keywords - Cellular componenti
Cell projection, CytoplasmPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000165919 | 1 – 570 | Dihydropyrimidinase-related protein 3Add BLAST | 570 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length | |
---|---|---|---|---|---|
Modified residuei | 259 | PhosphoserineBy similarity | 1 | ||
Modified residuei | 431 | PhosphotyrosineBy similarity | 1 | ||
Modified residuei | 499 | PhosphotyrosineBy similarity | 1 | ||
Modified residuei | 509 | PhosphothreonineCombined sources | 1 | ||
Modified residuei | 514 | PhosphothreonineCombined sources | 1 | ||
Modified residuei | 518 | Phosphoserine; by GSK3By similarity | 1 | ||
Modified residuei | 522 | PhosphoserineCombined sources | 1 | ||
Modified residuei | 536 | PhosphoserineBy similarity | 1 | ||
Modified residuei | 539 | PhosphoserineBy similarity | 1 | ||
Modified residuei | 541 | PhosphoserineBy similarity | 1 | ||
Modified residuei | 543 | PhosphothreonineBy similarity | 1 | ||
Isoform 2 (identifier: Q62952-2) | |||||
Modified residuei | 101 | PhosphoserineCombined sources | 1 |
Post-translational modificationi
Phosphorylation on Ser-522 by DYRK2 promotes subsequent phosphorylation on Thr-509, Thr-514 and Ser-518 by GSK3.By similarity
Keywords - PTMi
PhosphoproteinProteomic databases
jPOSTi | Q62952 |
PaxDbi | Q62952 |
PRIDEi | Q62952 |
2D gel databases
World-2DPAGEi | 0004:Q62952 |
PTM databases
iPTMneti | Q62952 |
PhosphoSitePlusi | Q62952 |
Expressioni
Tissue specificityi
Isoform 2 is expressed in growth cones. Up-regulated in motor neurons during axonal regeneration after sciatic nerve lesion. Overexpression of isoform 2 increased neurite extension and branching. Isoform 1 is expressed throughout neurons and their axons.1 Publication
Developmental stagei
At E17, isoform 2 is expressed in the CNS and PNS. Isoform 2 is expressed at high levels in the dorsal root ganglia, trigeminal ganglia, and throughout the spinal cord with the highest level in the ventral horn.1 Publication
Gene expression databases
Bgeei | ENSRNOG00000018992, Expressed in testis and 20 other tissues |
Genevisiblei | Q62952, RN |
Interactioni
Subunit structurei
GO - Molecular functioni
- filamin binding Source: RGD
- identical protein binding Source: UniProtKB
- phosphoprotein binding Source: RGD
- SH3 domain binding Source: RGD
Protein-protein interaction databases
BioGRIDi | 247453, 1 interactor |
IntActi | Q62952, 3 interactors |
STRINGi | 10116.ENSRNOP00000025880 |
Family & Domainsi
Sequence similaritiesi
Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.Curated
Phylogenomic databases
eggNOGi | KOG2584, Eukaryota |
GeneTreei | ENSGT00990000203521 |
InParanoidi | Q62952 |
OMAi | FEKWREW |
OrthoDBi | 719800at2759 |
PhylomeDBi | Q62952 |
TreeFami | TF314706 |
Family and domain databases
CDDi | cd01314, D-HYD, 1 hit |
Gene3Di | 2.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR006680, Amidohydro-rel IPR030628, DRP3 IPR011778, Hydantoinase/dihydroPyrase IPR011059, Metal-dep_hydrolase_composite IPR032466, Metal_Hydrolase |
PANTHERi | PTHR11647:SF57, PTHR11647:SF57, 1 hit |
Pfami | View protein in Pfam PF01979, Amidohydro_1, 1 hit |
SUPFAMi | SSF51338, SSF51338, 2 hits SSF51556, SSF51556, 1 hit |
TIGRFAMsi | TIGR02033, D-hydantoinase, 1 hit |
s (2)i Sequence
Sequence statusi: Complete.
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketIsoform 1 (identifier: Q62952-1) [UniParc]FASTAAdd to basket
Also known as: TUC-4b
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MSYQGKKNIP RITSDRLLIK GGRIVNDDQS FYADIYMEDG LIKQIGDNLI
60 70 80 90 100
VPGGVKTIEA NGKMVMPGGI DVHTHFQMPY KGMTTVDDFF QGTKAALAGG
110 120 130 140 150
TTMIIDHVVP EPESSLTEAY EKWREWADGK SCCDYALHVD ITHWNDSVKQ
160 170 180 190 200
EVQNLSKEKG VNSFMVYMAY KDLYQVSNTE LYEIFTCLGE LGAIAQVHAE
210 220 230 240 250
NGDIIAQEQA RMLEMGITGP EGHVLSRPEE LEAEAVFRAI TVASQTNCPL
260 270 280 290 300
YVTKVMSKSA ADLISQARKK GNVVFGEPIT ASLGIDGTHY WSKNWAKAAA
310 320 330 340 350
FVTSPPLSPD PTTPDYINSL LASGDLQLSG SAHCTFSTAQ KAIGKDNFTA
360 370 380 390 400
IPEGTNGVEE RMSVIWDKAV ATGKMDENQF VAVTSTNAAK IFNLYPRKGR
410 420 430 440 450
IAVGSDSDLV IWDPDAVKIV SAKNHQSVAE YNIFEGMELR GAPLVVICQG
460 470 480 490 500
KIMLEDGNLH VTQGAGRFIP CSPFSDYVYK RIKARRKMAD LHAVPRGMYD
510 520 530 540 550
GPVFDLTTTP KGGTPAGSTR GSPTRPNPPV RNLHQSGFSL SGTQVDEGVR
560 570
SASKRIVAPP GGRSNITSLS
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_016557 | 1 – 13 | MSYQG…IPRIT → MASGRRGWDSSHEDDLPVYL ARPGTTDQVPRQKYGGMFCN VEGAFESKTLDFDALSVGQR GAKTPRSSQGSGRGAGNRPG VEGDTRRGPGREESREPVPE SPKPAGVEIRSATGKEVLQN LGPKDK in isoform 2. 1 PublicationAdd BLAST | 13 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF398465 mRNA Translation: AAM73758.1 AF389425 mRNA Translation: AAK64497.1 U52104 mRNA Translation: AAB03282.1 |
RefSeqi | NP_037066.1, NM_012934.1 [Q62952-1] XP_006254732.1, XM_006254670.3 [Q62952-2] |
Genome annotation databases
Ensembli | ENSRNOT00000025880; ENSRNOP00000025880; ENSRNOG00000018992 [Q62952-2] ENSRNOT00000087876; ENSRNOP00000070679; ENSRNOG00000018992 [Q62952-1] |
GeneIDi | 25418 |
KEGGi | rno:25418 |
UCSCi | RGD:2410, rat [Q62952-1] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF398465 mRNA Translation: AAM73758.1 AF389425 mRNA Translation: AAK64497.1 U52104 mRNA Translation: AAB03282.1 |
RefSeqi | NP_037066.1, NM_012934.1 [Q62952-1] XP_006254732.1, XM_006254670.3 [Q62952-2] |
3D structure databases
SMRi | Q62952 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 247453, 1 interactor |
IntActi | Q62952, 3 interactors |
STRINGi | 10116.ENSRNOP00000025880 |
Protein family/group databases
MEROPSi | M38.976 |
PTM databases
iPTMneti | Q62952 |
PhosphoSitePlusi | Q62952 |
2D gel databases
World-2DPAGEi | 0004:Q62952 |
Proteomic databases
jPOSTi | Q62952 |
PaxDbi | Q62952 |
PRIDEi | Q62952 |
Genome annotation databases
Ensembli | ENSRNOT00000025880; ENSRNOP00000025880; ENSRNOG00000018992 [Q62952-2] ENSRNOT00000087876; ENSRNOP00000070679; ENSRNOG00000018992 [Q62952-1] |
GeneIDi | 25418 |
KEGGi | rno:25418 |
UCSCi | RGD:2410, rat [Q62952-1] |
Organism-specific databases
CTDi | 1809 |
RGDi | 2410, Dpysl3 |
Phylogenomic databases
eggNOGi | KOG2584, Eukaryota |
GeneTreei | ENSGT00990000203521 |
InParanoidi | Q62952 |
OMAi | FEKWREW |
OrthoDBi | 719800at2759 |
PhylomeDBi | Q62952 |
TreeFami | TF314706 |
Enzyme and pathway databases
Reactomei | R-RNO-399956, CRMPs in Sema3A signaling |
Miscellaneous databases
PROi | PR:Q62952 |
Gene expression databases
Bgeei | ENSRNOG00000018992, Expressed in testis and 20 other tissues |
Genevisiblei | Q62952, RN |
Family and domain databases
CDDi | cd01314, D-HYD, 1 hit |
Gene3Di | 2.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR006680, Amidohydro-rel IPR030628, DRP3 IPR011778, Hydantoinase/dihydroPyrase IPR011059, Metal-dep_hydrolase_composite IPR032466, Metal_Hydrolase |
PANTHERi | PTHR11647:SF57, PTHR11647:SF57, 1 hit |
Pfami | View protein in Pfam PF01979, Amidohydro_1, 1 hit |
SUPFAMi | SSF51338, SSF51338, 2 hits SSF51556, SSF51556, 1 hit |
TIGRFAMsi | TIGR02033, D-hydantoinase, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | DPYL3_RAT | |
Accessioni | Q62952Primary (citable) accession number: Q62952 Secondary accession number(s): Q8K4H3, Q91XM8 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 15, 1998 |
Last sequence update: | December 6, 2005 | |
Last modified: | October 7, 2020 | |
This is version 157 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Direct protein sequencing, Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families