UniProtKB - Q62431 (ARI3A_MOUSE)

BLAST

>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus OX=10090 GN=Arid3a PE=1 SV=1
MKLQAVMETLIQRQQRARQELEARQAPPPPPPEPTGVRARTTMTDEDREPENARMHRTQM
AALAAMRAAAAGLGHPSSPGGSEDGPPISGDEDTAREGTLSSPALHGSVLEGAGHAEGDR
HLMDVGSDDDDTKSKWEEQELEELGEEEEEEEEEDDFEEEEEEEEGLGPPESASLGTAGL
FTRKAPPAQAFRGDGGPRMLSGPERLGPGPAHPSHMASQMPPPDHGDWTFEEQFKQLYEL
DADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR
EITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFG
GSLFAYSPSGAHSMLPSPKLPVTPLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPV
SLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESTEPPEKKMALVADEQQRLMQ
RAVQQSFLAMTAQLPMNIRINSQASESRQDSAVSLTSANGSNSISMSVEMNGIVYTGVLF
AQPPPPTAPSAPGKGGVSSIGTNTTTGSRTGASGSTVSGGQVGLPGVSTPTMSSTSNNSL
P

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History
Entry version 139 (07 Nov 2018)
Sequence version 1 (01 Nov 1996)
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Protein

AT-rich interactive domain-containing protein 3A

Gene

Arid3a

Organism

Mus musculus (Mouse)

Status

Reviewed-Annotation score: -Experimental evidence at protein levelⁱ

Functionⁱ

Transcription factor involved in B-cell differentiation. Binds a VH promoter proximal site necessary for induced mu-heavy-chain transcription. Binds the minor groove of a restricted ATC sequence that is sufficient for nuclear matrix association. This sequence motif is present in matrix-associating regions (MARS) proximal to the promoter and flanking E mu. Activates E mu-driven transcription by binding these sites. May be involved in the control of cell cycle progression by the RB1/E2F1 pathway.3 Publications

GO - Molecular functionⁱ

chromatin binding
Source: MGI
Inferred from direct assayⁱ
- 21955986
DNA binding
Source: MGI
Inferred from direct assayⁱ
- 15456761
DNA-binding transcription activator activity, RNA polymerase II-specific
Source: NTNU_SB
Inferred from direct assayⁱ
- 15456761
DNA-binding transcription factor activity
Source: MGI
Inferred from direct assayⁱ
- 15456761
- 21955986
protein homodimerization activity
Source: MGI
Inferred from physical interactionⁱ
- 15456761
RNA polymerase II regulatory region sequence-specific DNA binding
Source: NTNU_SB
Inferred from direct assayⁱ
- 15456761

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

positive regulation of transcription by RNA polymerase II
Source: NTNU_SB
Inferred from mutant phenotypeⁱ
- 15456761
regulation of transcription, DNA-templated
Source: MGI
Inferred from direct assayⁱ
- 15456761

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Activator, DNA-binding
Biological process	Transcription, Transcription regulation

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: AT-rich interactive domain-containing protein 3A Short name: ARID domain-containing protein 3A Alternative name(s): B-cell regulator of IgH transcription Short name: Bright Dead ringer-like protein 1
Gene namesⁱ	Name:Arid3a Synonyms:Dri1, Dril1
Organismⁱ	Mus musculus (Mouse)
Taxonomic identifierⁱ	10090 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
Proteomesⁱ	UP000000589 Componentⁱ: Chromosome 10

Organism-specific databases

MGIⁱ	MGI:1328360 Arid3a

Keywords - Cellular componentⁱ

Cytoplasm, Nucleus

Pathology & Biotechⁱ

Mutagenesis

Feature key	Position(s)	DescriptionActions	Length
Mutagenesisⁱ	268	P → A: Impairs DNA-binding. 1 Publication	1
Mutagenesisⁱ	299	W → A: Impairs DNA-binding. 1 Publication	1
Mutagenesisⁱ	317	F → A: Impairs DNA-binding. 1 Publication	1
Mutagenesisⁱ	330	Y → A: Impairs DNA-binding. 1 Publication	1
Mutagenesisⁱ	457	K → A: No effect on cellular location. 1 Publication	1
Mutagenesisⁱ	463	P → A: Abolishes nuclear localization. 1 Publication	1
Mutagenesisⁱ	466	K → A: Abolishes nuclear localization. 1 Publication	1
Mutagenesisⁱ	467	K → A: Abolishes nuclear localization. 1 Publication	1
Mutagenesisⁱ	532	G → A: Abolishes cytosolic localization. 1 Publication	1
Mutagenesisⁱ	535	Y → A: Abolishes cytosolic localization. 1 Publication	1
Mutagenesisⁱ	535	Y → F: No effect on cellular location. 1 Publication	1
Mutagenesisⁱ	537	G → A: Abolishes cytosolic localization. 1 Publication	1
Mutagenesisⁱ	539	L → A: Abolishes cytosolic localization. 1 Publication	1

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000200579	1 – 601	AT-rich interactive domain-containing protein 3AAdd BLAST		601

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Modified residueⁱ	78	PhosphoserineBy similarity	1
Modified residueⁱ	82	PhosphoserineCombined sources	1
Modified residueⁱ	89	PhosphoserineCombined sources	1
Modified residueⁱ	99	PhosphothreonineBy similarity	1
Modified residueⁱ	102	PhosphoserineBy similarity	1
Modified residueⁱ	127	PhosphoserineCombined sources	1
Modified residueⁱ	358	PhosphoserineCombined sources	1
Modified residueⁱ	367	PhosphoserineBy similarity	1
Cross-linkⁱ	403	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linkⁱ	404	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linkⁱ	457	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linkⁱ	467	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMⁱ

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDⁱ	Q62431
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	Q62431
PaxDbⁱ	Q62431
PeptideAtlas More...PeptideAtlasⁱ	Q62431
PRIDEⁱ	Q62431

PTM databases

iPTMnetⁱ	Q62431
PhosphoSitePlusⁱ	Q62431

Expressionⁱ

Tissue specificityⁱ

B-cell specific in the adult. Expressed in B-cell progenitors, down-regulated in the immature B-cell stage, and is up-regulated again at later stages of B-lymphocyte differentiation.1 Publication

Developmental stageⁱ

Expressed in lymphocytes from fetal liver. Expressed in fetal thymus and brain.1 Publication

Gene expression databases

Bgeeⁱ	ENSMUSG00000019564 Expressed in 190 organ(s), highest expression level in renal system
CleanExⁱ	MM_ARID3A
ExpressionAtlasⁱ	Q62431 baseline and differential
Genevisibleⁱ	Q62431 MM

Interactionⁱ

Subunit structureⁱ

Homodimer. Heterodimer with ARID3B. Interacts with E2F1 (By similarity). Interacts with GTF2I and BTK.By similarity3 Publications

GO - Molecular functionⁱ

protein homodimerization activity
Source: MGI
Inferred from physical interactionⁱ
- 15456761

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	199312, 2 interactors
IntActⁱ	Q62431, 1 interactor
Molecular INTeraction database More...MINTⁱ	Q62431
STRINGⁱ	10090.ENSMUSP00000019708

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q62431
SMRⁱ	Q62431
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	243 – 335	ARIDPROSITE-ProRule annotationAdd BLAST		93
Domainⁱ	449 – 546	REKLESPROSITE-ProRule annotationAdd BLAST		98

Region

Feature key	Position(s)	DescriptionActions	Length
Regionⁱ	128 – 165	AcidicAdd BLAST	38
Regionⁱ	450 – 493	Important for nuclear localizationAdd BLAST	44
Regionⁱ	495 – 518	HomodimerizationBy similarityAdd BLAST	24
Regionⁱ	542 – 562	Important for cytoplasmic localizationAdd BLAST	21

Compositional bias

Feature key	Position(s)	DescriptionActions	Length
Compositional biasⁱ	27 – 34	Poly-Pro	8
Compositional biasⁱ	68 – 71	Poly-Ala	4
Compositional biasⁱ	128 – 131	Poly-Asp	4
Compositional biasⁱ	146 – 154	Poly-Glu	9
Compositional biasⁱ	158 – 165	Poly-Glu	8
Compositional biasⁱ	437 – 446	Poly-Ala	10
Compositional biasⁱ	543 – 546	Poly-Pro	4

Phylogenomic databases

eggNOGⁱ	KOG2744 Eukaryota ENOG410Y2AP LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00550000074575
HOGENOMⁱ	HOG000236281
HOVERGENⁱ	HBG050574
InParanoidⁱ	Q62431
OMAⁱ	MKPKWEE
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G16XQ
PhylomeDBⁱ	Q62431
TreeFamⁱ	TF320364

Family and domain databases

Gene3Dⁱ	1.10.150.60, 1 hit
InterProⁱ	View protein in InterPro IPR001606 ARID_dom IPR036431 ARID_dom_sf IPR023334 REKLES_domain
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF01388 ARID, 1 hit
SMARTⁱ	View protein in SMART SM00501 BRIGHT, 1 hit
SUPFAMⁱ	SSF46774 SSF46774, 1 hit
PROSITEⁱ	View protein in PROSITE PS51011 ARID, 1 hit PS51486 REKLES, 1 hit

Sequence (1+)ⁱ

Sequence statusⁱ: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show all Align All

Q62431-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MKLQAVMETL IQRQQRARQE LEARQAPPPP PPEPTGVRAR TTMTDEDREP 
        60         70         80         90        100
ENARMHRTQM AALAAMRAAA AGLGHPSSPG GSEDGPPISG DEDTAREGTL 
       110        120        130        140        150
SSPALHGSVL EGAGHAEGDR HLMDVGSDDD DTKSKWEEQE LEELGEEEEE 
       160        170        180        190        200
EEEEDDFEEE EEEEEGLGPP ESASLGTAGL FTRKAPPAQA FRGDGGPRML 
       210        220        230        240        250
SGPERLGPGP AHPSHMASQM PPPDHGDWTF EEQFKQLYEL DADPKRKEFL 
       260        270        280        290        300
DDLFSFMQKR GTPVNRIPIM AKQVLDLFML YVLVTEKGGL VEVINKKLWR 
       310        320        330        340        350
EITKGLNLPT SITSAAFTLR TQYMKYLYPY ECERRGLSSP NELQAAIDSN 
       360        370        380        390        400
RREGRRQSFG GSLFAYSPSG AHSMLPSPKL PVTPLGLAAS TNGSSITPAP 
       410        420        430        440        450
KIKKEEDSAI PITVPGRLPV SLAGHPVVAA QAAAVQAAAA QAAVAAQAAA 
       460        470        480        490        500
LEQLREKLES TEPPEKKMAL VADEQQRLMQ RAVQQSFLAM TAQLPMNIRI 
       510        520        530        540        550
NSQASESRQD SAVSLTSANG SNSISMSVEM NGIVYTGVLF AQPPPPTAPS 
       560        570        580        590        600
APGKGGVSSI GTNTTTGSRT GASGSTVSGG QVGLPGVSTP TMSSTSNNSL 

P

Length:601

Mass (Da):64,173

Last modified:November 1, 1996 - v1

Checksum:ⁱ66994C01E1FB68CD

Computationally mapped potential isoform sequencesⁱ

There are 2 potential isoforms mapped to this entry.BLAST Align Show all Add to basket

Entry	Entry name	Protein names	Gene names	Length	Annotation

A0A0R4J1A7	A0A0R4J1A7_MOUSE	AT-rich interactive domain-containi... AT-rich interactive domain-containing protein 3A	Arid3a	599	Annotation score:
D3YVQ2	D3YVQ2_MOUSE	AT-rich interactive domain-containi... AT-rich interactive domain-containing protein 3A	Arid3a	108	Annotation score:

Experimental Info

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Sequence conflictⁱ	405 – 406	Missing in AAH50925 (PubMed:15489334).Curated		2

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U60335 mRNA Translation: AAB03416.1 AK141283 mRNA Translation: BAE24635.1 AK154956 mRNA Translation: BAE32951.1 BC050925 mRNA Translation: AAH50925.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS23999.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001275554.1, NM_001288625.1 NP_001275555.1, NM_001288626.1 NP_031906.1, NM_007880.4 XP_006513264.1, XM_006513201.3 XP_006513265.1, XM_006513202.3
UniGeneⁱ	Mm.301282

Genome annotation databases

Ensemblⁱ	ENSMUST00000019708; ENSMUSP00000019708; ENSMUSG00000019564 ENSMUST00000105376; ENSMUSP00000101015; ENSMUSG00000019564
GeneIDⁱ	13496
KEGGⁱ	mmu:13496
UCSC genome browser More...UCSCⁱ	uc007gap.2 mouse

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q62431	AT-rich interactive domain-containing protein 3A (Fragment)		MOUSE		108	UniRef100_Q62431

Protein	Similar proteins		Species	Score	Length	Source
Q62431	AT-rich interactive domain-containing protein 3A (Fragment)		MOUSE		108	UniRef90_Q62431
AT-rich interactive domain-containing protein 3A isoform X1		MESAU		594
AT-rich interaction domain 3A		RAT		594
UPI000A30A824		MUSPA		601
UPI000A3192EC		MUSCR		601
+6

Protein	Similar proteins		Species	Score	Length	Source
Q62431	AT-rich interactive domain-containing protein 3A (Fragment)		MOUSE		108	UniRef50_Q62431
AT-rich interaction domain 3A		RAT		594
AT-rich interactive domain-containing protein 3A isoform X1		MESAU		594
Uncharacterized protein (Fragment)		Micrurus lemniscatus lemniscatus		103
Uncharacterized protein		FELCA		608
+93

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	U60335 mRNA Translation: AAB03416.1 AK141283 mRNA Translation: BAE24635.1 AK154956 mRNA Translation: BAE32951.1 BC050925 mRNA Translation: AAH50925.1
CCDSⁱ	CCDS23999.1
RefSeqⁱ	NP_001275554.1, NM_001288625.1 NP_001275555.1, NM_001288626.1 NP_031906.1, NM_007880.4 XP_006513264.1, XM_006513201.3 XP_006513265.1, XM_006513202.3
UniGeneⁱ	Mm.301282

3D structure databases

ProteinModelPortalⁱ	Q62431
SMRⁱ	Q62431
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	199312, 2 interactors
IntActⁱ	Q62431, 1 interactor
MINTⁱ	Q62431
STRINGⁱ	10090.ENSMUSP00000019708

PTM databases

iPTMnetⁱ	Q62431
PhosphoSitePlusⁱ	Q62431

Proteomic databases

EPDⁱ	Q62431
MaxQBⁱ	Q62431
PaxDbⁱ	Q62431
PeptideAtlasⁱ	Q62431
PRIDEⁱ	Q62431

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSMUST00000019708; ENSMUSP00000019708; ENSMUSG00000019564 ENSMUST00000105376; ENSMUSP00000101015; ENSMUSG00000019564
GeneIDⁱ	13496
KEGGⁱ	mmu:13496
UCSCⁱ	uc007gap.2 mouse

Organism-specific databases

CTDⁱ	1820
MGIⁱ	MGI:1328360 Arid3a

Phylogenomic databases

eggNOGⁱ	KOG2744 Eukaryota ENOG410Y2AP LUCA
GeneTreeⁱ	ENSGT00550000074575
HOGENOMⁱ	HOG000236281
HOVERGENⁱ	HBG050574
InParanoidⁱ	Q62431
OMAⁱ	MKPKWEE
OrthoDBⁱ	EOG091G16XQ
PhylomeDBⁱ	Q62431
TreeFamⁱ	TF320364

Miscellaneous databases

ChiTaRSⁱ	Arid3a mouse
Protein Ontology More...PROⁱ	PR:Q62431
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSMUSG00000019564 Expressed in 190 organ(s), highest expression level in renal system
CleanExⁱ	MM_ARID3A
ExpressionAtlasⁱ	Q62431 baseline and differential
Genevisibleⁱ	Q62431 MM

Family and domain databases

Gene3Dⁱ	1.10.150.60, 1 hit
InterProⁱ	View protein in InterPro IPR001606 ARID_dom IPR036431 ARID_dom_sf IPR023334 REKLES_domain
Pfamⁱ	View protein in Pfam PF01388 ARID, 1 hit
SMARTⁱ	View protein in SMART SM00501 BRIGHT, 1 hit
SUPFAMⁱ	SSF46774 SSF46774, 1 hit
PROSITEⁱ	View protein in PROSITE PS51011 ARID, 1 hit PS51486 REKLES, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	ARI3A_MOUSE
Accessionⁱ	Q62431Primary (citable) accession number: Q62431 Secondary accession number(s): Q3U338, Q80YP8
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	January 11, 2001
	Last sequence update:	November 1, 1996
	Last modified:	November 7, 2018
	This is version 139 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

MGD cross-references
Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q62431 (ARI3A_MOUSE)

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AT-rich interactive domain-containing protein 3A

Arid3a

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Other locations

Cytosol

Nucleus

Other locations

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Region

Compositional bias

Phylogenomic databases

Family and domain databases

Experimental Info

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ