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UniProtKB - Q61029 (LAP2B_MOUSE)

Entry version 173 (12 Aug 2020)
Sequence version 4 (27 Jul 2011)
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Protein

Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma

Gene

Tmpo

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May help direct the assembly of the nuclear lamina and thereby help maintain the structural organization of the nuclear envelope. Possible receptor for attachment of lamin filaments to the inner nuclear membrane. May be involved in the control of initiation of DNA replication through its interaction with NAKAP95 (By similarity).By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma
Alternative name(s):
Thymopoietin isoforms beta/delta/epsilon/gamma
Short name:
TP beta/delta/epsilon/gamma
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Tmpo
Synonyms:Lap2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 10

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:106920, Tmpo

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei410 – 430Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini431 – 452LumenalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Chromosome, Membrane, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002061461 – 452Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gammaAdd BLAST452

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei59PhosphoserineBy similarity1
Modified residuei66PhosphoserineCombined sources1
Modified residuei67PhosphoserineCombined sources1
Modified residuei74PhosphothreonineCombined sources1 Publication1
Modified residuei79PhosphoserineBy similarity1
Modified residuei82PhosphoserineCombined sources1
Modified residuei85Omega-N-methylarginineCombined sources1
Modified residuei87Omega-N-methylarginineCombined sources1
Modified residuei153PhosphothreonineCombined sources1
Modified residuei155PhosphoserineCombined sources1
Modified residuei158PhosphoserineCombined sources1
Modified residuei159PhosphothreonineCombined sources1 Publication1
Modified residuei163PhosphothreonineBy similarity1
Modified residuei165PhosphoserineCombined sources1
Modified residuei167PhosphoserineCombined sources1
Modified residuei176Phosphoserine1 Publication1
Modified residuei179Phosphoserine; by PKC1 Publication1
Modified residuei183PhosphoserineBy similarity1
Modified residuei189PhosphoserineBy similarity1
Modified residuei206N6-acetyllysineCombined sources1
Modified residuei210PhosphothreonineBy similarity1
Modified residuei221PhosphoserineBy similarity1
Modified residuei223PhosphoserineBy similarity1
Modified residuei249PhosphoserineBy similarity1
Modified residuei253PhosphoserineBy similarity1
Modified residuei264PhosphoserineBy similarity1
Modified residuei291PhosphoserineBy similarity1
Modified residuei305PhosphoserineCombined sources1
Modified residuei306PhosphoserineCombined sources1
Modified residuei311PhosphothreonineBy similarity1
Modified residuei314PhosphoserineBy similarity1
Modified residuei319Citrulline1 Publication1
Modified residuei361PhosphoserineCombined sources1
Modified residuei377PhosphoserineBy similarity1
Modified residuei384PhosphoserineBy similarity1
Modified residuei388N6-acetyllysineCombined sources1
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section describes <strong>covalent linkages</strong> of various types formed <strong>between two proteins (interchain cross-links)</strong> or <strong>between two parts of the same protein (intrachain cross-links)</strong>, except the disulfide bonds that are annotated in the <a href="http://www.uniprot.org/manual/disulfid">'Disulfide bond'</a> subsection.<p><a href='/help/crosslnk' target='_top'>More...</a></p>Cross-linki400Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei401PhosphoserineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Mitosis-specific phosphorylation specifically abolishes its binding to lamin B and chromosomes.By similarity
Citrullinated by PADI4.1 Publication

Keywords - PTMi

Acetylation, Citrullination, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q61029

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q61029

PeptideAtlas

More...PeptideAtlasi		Q61029

PRoteomics IDEntifications database

More...PRIDEi		Q61029

Consortium for Top Down Proteomics

More...TopDownProteomicsi		Q61029-1 [Q61029-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q61029

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q61029

SwissPalm database of S-palmitoylation events

More...SwissPalmi		Q61029

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000019961, Expressed in otic placode and 322 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q61029, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q61029, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with LMNB1, LMNB2, BANF1, AKAP8L, GMCL and chromosomes.

By similarity

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		204234, 10 interactors

Protein interaction database and analysis system

More...IntActi		Q61029, 5 interactors

Molecular INTeraction database

More...MINTi		Q61029

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini5 – 48LEM-likePROSITE-ProRule annotationAdd BLAST44
Domaini109 – 153LEMPROSITE-ProRule annotationAdd BLAST45

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 409NucleoplasmicSequence analysisAdd BLAST409
Regioni49 – 108LinkerAdd BLAST60
Regioni137 – 242NAKAP95-binding NAdd BLAST106
Regioni298 – 370Binds lamins BAdd BLAST73
Regioni299 – 373NAKAP95-binding CAdd BLAST75

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Has two structurally independent, non-interacting domains: LEM-like (also called LAP2-N or LEM-D) and LEM (also called LAP2-C or LEM-B). LEM-like binds DNA while LEM interacts with BANF1 (By similarity).By similarity

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the LEM family.Curated

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

Ensembl GeneTree

More...GeneTreei		ENSGT00940000154098

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_032534_1_0_1

KEGG Orthology (KO)

More...KOi		K24031

Identification of Orthologs from Complete Genome Data

More...OMAi		LGDFRME

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.720.40, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR013146, LEM-like_dom
IPR011015, LEM/LEM-like_dom_sf
IPR003887, LEM_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03020, LEM, 1 hit
PF08198, Thymopoietin, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00540, LEM, 1 hit
SM01261, Thymopoietin, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF63451, SSF63451, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50954, LEM, 1 hit
PS50955, LEM_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (6)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 6 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform Beta (identifier: Q61029-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MPEFLEDPSV LTKDKLKSEL VANNVTLPAG EQRKDVYVQL YLQHLTARNR 
        60         70         80         90        100
PPLAAGANSK GPPDFSSDEE REPTPVLGSG ASVGRGRGAV GRKATKKTDK 
       110        120        130        140        150
PRLEDKDDLD VTELSNEELL DQLVRYGVNP GPIVGTTRKL YEKKLLKLRE 
       160        170        180        190        200
QGTESRSSTP LPTVSSSAEN TRQNGSNDSD RYSDNDEDSK IELKLEKREP 
       210        220        230        240        250
LKGRAKTPVT LKQRRTEHNQ SYSQAGVTET EWTSGSSTGG PLQALTREST 
       260        270        280        290        300
RGSRRTPRKR VETSQHFRID GAVISESTPI AETIKASSNE SLVANRLTGN 
       310        320        330        340        350
FKHASSILPI TEFSDITRRT PKKPLTRAEV GEKTEERRVD RDILKEMFPY 
       360        370        380        390        400
EASTPTGISA SCRRPIKGAA GRPLELSDFR MEESFSSKYV PKYAPLADVK 
       410        420        430        440        450
SEKTKKRRSV PMWIKMLLFA LVAVFLFLVY QAMETNQGNP FTNFLQDTKI 

SN
Length:452
Mass (Da):50,373
Last modified:July 27, 2011 - v4
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i132AF11B458DCFBA
GO
Isoform Alpha (identifier: Q61033-1) [UniParc]FASTAAdd to basket
The sequence of this isoform can be found in the external entry Q61033.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Length:693
Mass (Da):75,168
GO
Isoform Zeta (identifier: Q61033-2) [UniParc]FASTAAdd to basket
The sequence of this isoform can be found in the external entry Q61033.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Length:225
Mass (Da):24,990
GO
Isoform Delta (identifier: Q61029-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     221-292: Missing.

Show »
Length:380
Mass (Da):42,650
Checksum:iF2BE6B5556030A49
GO
Isoform Epsilon (identifier: Q61029-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     221-260: Missing.

Show »
Length:412
Mass (Da):46,050
Checksum:iC54639DAB8788CEE
GO
Isoform Gamma (identifier: Q61029-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     221-329: Missing.

Show »
Length:343
Mass (Da):38,502
Checksum:iBA62B6D869B0FDAD
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti72 – 73EP → DA in AAC52574 (PubMed:8743987).Curated2
Sequence conflicti72 – 73EP → DA in AAC52575 (PubMed:8743987).Curated2
Sequence conflicti72 – 73EP → DA in AAC52576 (PubMed:8743987).Curated2
Sequence conflicti72 – 73EP → DA in AAC52577 (PubMed:8743987).Curated2
Sequence conflicti422 – 424VAV → GAC in AAC52574 (PubMed:8743987).Curated3
Sequence conflicti422 – 424VAV → GAC in AAC52575 (PubMed:8743987).Curated3
Sequence conflicti422 – 424VAV → GAC in AAC52576 (PubMed:8743987).Curated3
Sequence conflicti422 – 424VAV → GAC in AAC52577 (PubMed:8743987).Curated3

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_010132221 – 329Missing in isoform Gamma. 1 PublicationAdd BLAST109
Alternative sequenceiVSP_010131221 – 292Missing in isoform Delta. 1 PublicationAdd BLAST72
Alternative sequenceiVSP_010130221 – 260Missing in isoform Epsilon. 1 PublicationAdd BLAST40

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
U39074 mRNA Translation: AAC52574.1
U39075 mRNA Translation: AAC52575.1
U39076 mRNA Translation: AAC52576.1
U39077 mRNA Translation: AAC52577.1
AK150305 mRNA Translation: BAE29455.1
AK150515 mRNA Translation: BAE29627.1
AK153281 mRNA Translation: BAE31865.1
AK165851 mRNA Translation: BAE38413.1
CH466539 Genomic DNA Translation: EDL21533.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS36032.1 [Q61029-4]
CCDS36033.1 [Q61029-2]
CCDS36034.1 [Q61029-3]
CCDS36035.1 [Q61029-1]

NCBI Reference Sequences

More...RefSeqi		NP_001073598.1, NM_001080129.2 [Q61029-1]
NP_001073600.1, NM_001080131.2 [Q61029-2]
NP_001073601.1, NM_001080132.2 [Q61029-4]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000072239; ENSMUSP00000072092; ENSMUSG00000019961 [Q61029-1]
ENSMUST00000092219; ENSMUSP00000089864; ENSMUSG00000019961 [Q61029-3]
ENSMUST00000099355; ENSMUSP00000096956; ENSMUSG00000019961 [Q61029-2]
ENSMUST00000105293; ENSMUSP00000100930; ENSMUSG00000019961 [Q61029-4]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		21917

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:21917

UCSC genome browser

More...UCSCi		uc007gtq.2, mouse [Q61029-1]
uc007gts.2, mouse [Q61029-2]
uc007gtt.2, mouse [Q61029-4]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39074 mRNA Translation: AAC52574.1
U39075 mRNA Translation: AAC52575.1
U39076 mRNA Translation: AAC52576.1
U39077 mRNA Translation: AAC52577.1
AK150305 mRNA Translation: BAE29455.1
AK150515 mRNA Translation: BAE29627.1
AK153281 mRNA Translation: BAE31865.1
AK165851 mRNA Translation: BAE38413.1
CH466539 Genomic DNA Translation: EDL21533.1
CCDSiCCDS36032.1 [Q61029-4]
CCDS36033.1 [Q61029-2]
CCDS36034.1 [Q61029-3]
CCDS36035.1 [Q61029-1]
RefSeqiNP_001073598.1, NM_001080129.2 [Q61029-1]
NP_001073600.1, NM_001080131.2 [Q61029-2]
NP_001073601.1, NM_001080132.2 [Q61029-4]

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi204234, 10 interactors
IntActiQ61029, 5 interactors
MINTiQ61029

PTM databases

iPTMnetiQ61029
PhosphoSitePlusiQ61029
SwissPalmiQ61029

Proteomic databases

EPDiQ61029
jPOSTiQ61029
PeptideAtlasiQ61029
PRIDEiQ61029
TopDownProteomicsiQ61029-1 [Q61029-1]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		2387, 372 antibodies

Genome annotation databases

EnsembliENSMUST00000072239; ENSMUSP00000072092; ENSMUSG00000019961 [Q61029-1]
ENSMUST00000092219; ENSMUSP00000089864; ENSMUSG00000019961 [Q61029-3]
ENSMUST00000099355; ENSMUSP00000096956; ENSMUSG00000019961 [Q61029-2]
ENSMUST00000105293; ENSMUSP00000100930; ENSMUSG00000019961 [Q61029-4]
GeneIDi21917
KEGGimmu:21917
UCSCiuc007gtq.2, mouse [Q61029-1]
uc007gts.2, mouse [Q61029-2]
uc007gtt.2, mouse [Q61029-4]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		7112
MGIiMGI:106920, Tmpo

Phylogenomic databases

GeneTreeiENSGT00940000154098
HOGENOMiCLU_032534_1_0_1
KOiK24031
OMAiLGDFRME

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		21917, 1 hit in 18 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Tmpo, mouse

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000019961, Expressed in otic placode and 322 other tissues
ExpressionAtlasiQ61029, baseline and differential
GenevisibleiQ61029, MM

Family and domain databases

Gene3Di1.10.720.40, 2 hits
InterProiView protein in InterPro
IPR013146, LEM-like_dom
IPR011015, LEM/LEM-like_dom_sf
IPR003887, LEM_dom
PfamiView protein in Pfam
PF03020, LEM, 1 hit
PF08198, Thymopoietin, 1 hit
SMARTiView protein in SMART
SM00540, LEM, 1 hit
SM01261, Thymopoietin, 1 hit
SUPFAMiSSF63451, SSF63451, 2 hits
PROSITEiView protein in PROSITE
PS50954, LEM, 1 hit
PS50955, LEM_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLAP2B_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q61029
Secondary accession number(s): Q3UCI5
, Q61030, Q61031, Q61032
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: July 27, 2011
Last modified: August 12, 2020
This is version 173 of the entry and version 4 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
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