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Protein

Protein LSM12 homolog

Gene

LSM12

Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • RNA metabolic process Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LSM12 homolog
Gene namesi
Name:LSM12
ORF Names:RCJMB04_1k23
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003051291 – 194Protein LSM12 homologAdd BLAST194

Proteomic databases

PRIDEiQ5ZML5

Expressioni

Gene expression databases

BgeeiENSGALG00000027542 Expressed in 10 organ(s), highest expression level in testis

Family & Domainsi

Sequence similaritiesi

Belongs to the LSM12 family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000006956
HOVERGENiHBG057351
InParanoidiQ5ZML5
OrthoDBiEOG091G0RRA
PhylomeDBiQ5ZML5

Family and domain databases

InterProiView protein in InterPro
IPR019181 Anticodon-binding_dom
IPR039683 Lsm12-like
PANTHERiPTHR13542 PTHR13542, 1 hit
PfamiView protein in Pfam
PF09793 AD, 1 hit
SMARTiView protein in SMART
SM00995 AD, 1 hit

Sequencei

Sequence statusi: Complete.

Q5ZML5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAPGECFSV GSQVSCRTCQ EQRLQGEVVA FDYPSKMLAL KCPSSSGKPN
60 70 80 90 100
HADILLVNLQ YVSEVEIIND RTETPPPLAS LNVSKLANKA RMEKEEKLSQ
110 120 130 140 150
AYAISAGVSL EGQQLFQTIH KTIKDCKWQE KNIVVMEEVV IAPPYQVENC
160 170 180 190
KGKEGSALGH VRKIVEKHFR DVESQKVMQR SQAQQTQKES ALSS
Length:194
Mass (Da):21,520
Last modified:November 23, 2004 - v1
Checksum:iABBBAE5B8EEAE123
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719369 mRNA Translation: CAG31028.1
RefSeqiNP_001131123.1, NM_001137651.1
UniGeneiGga.39235

Genome annotation databases

EnsembliENSGALT00000065412; ENSGALP00000043938; ENSGALG00000039803
GeneIDi776864
KEGGigga:776864

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719369 mRNA Translation: CAG31028.1
RefSeqiNP_001131123.1, NM_001137651.1
UniGeneiGga.39235

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ5ZML5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000065412; ENSGALP00000043938; ENSGALG00000039803
GeneIDi776864
KEGGigga:776864

Organism-specific databases

CTDi124801

Phylogenomic databases

GeneTreeiENSGT00390000006956
HOVERGENiHBG057351
InParanoidiQ5ZML5
OrthoDBiEOG091G0RRA
PhylomeDBiQ5ZML5

Miscellaneous databases

PROiPR:Q5ZML5

Gene expression databases

BgeeiENSGALG00000027542 Expressed in 10 organ(s), highest expression level in testis

Family and domain databases

InterProiView protein in InterPro
IPR019181 Anticodon-binding_dom
IPR039683 Lsm12-like
PANTHERiPTHR13542 PTHR13542, 1 hit
PfamiView protein in Pfam
PF09793 AD, 1 hit
SMARTiView protein in SMART
SM00995 AD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiLSM12_CHICK
AccessioniPrimary (citable) accession number: Q5ZML5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: November 23, 2004
Last modified: November 7, 2018
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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