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Protein

Zinc finger CCCH domain-containing protein 8

Gene

Os01g0616400

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri105 – 133C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri156 – 184C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri209 – 237C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri288 – 316C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri367 – 395C3H1-type 5PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri422 – 450C3H1-type 6PROSITE-ProRule annotationAdd BLAST29

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 8
Short name:
OsC3H8
Gene namesi
Ordered Locus Names:Os01g0616400, LOC_Os01g42970
ORF Names:P0686E09.13-1, P0686E09.13-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003468051 – 462Zinc finger CCCH domain-containing protein 8Add BLAST462

Proteomic databases

PaxDbiQ5ZDJ6

Expressioni

Gene expression databases

ExpressionAtlasiQ5ZDJ6 differential
GenevisibleiQ5ZDJ6 OS

Structurei

3D structure databases

ProteinModelPortaliQ5ZDJ6
SMRiQ5ZDJ6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri105 – 133C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri156 – 184C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri209 – 237C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri288 – 316C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri367 – 395C3H1-type 5PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri422 – 450C3H1-type 6PROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IU2N Eukaryota
ENOG410Y25U LUCA
HOGENOMiHOG000078745
InParanoidiQ5ZDJ6
OMAiQPIMGSH
OrthoDBiEOG09360DYS

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 6 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 6 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 6 hits

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5ZDJ6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD
60 70 80 90 100
LDARLAGARR SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP
110 120 130 140 150
IYPQRPGEKD CAFYMMTRTC KFGGSCKFDH PQWVPEGGIP NWKEQAANVE
160 170 180 190 200
ESYPEQEGEP DCPFFMKTGK CKFGSKCKFN HPKEKVNALA SGNTNDKHLI
210 220 230 240 250
ADSSILPVRP SEPLCSFYAK TGKCKFRAMC KFNHPKDIEI PSSQNEPESA
260 270 280 290 300
VTVEGETDIG SAADSVSAKM QTPVAAAQEF NSKGLPMRPG EVDCPFYMKM
310 320 330 340 350
GSCKFGSTCR FNHPDRLVLN FPLPLGQTIL PTPESMLLNS SANFMQGFDF
360 370 380 390 400
HAAHMPVGPG PVTYPQRPGA TVCDFYMKTG FCKFADRCKF HHPIDRSAPD
410 420 430 440 450
PSANWEPAEE SVQLTLAGLP RREDAVVCAF YMKTGVCKFG MQCKFDHPPP
460
QEAIAKVSNS GS
Length:462
Mass (Da):50,358
Last modified:September 2, 2008 - v2
Checksum:i31B7CBCFCE7229CC
GO
Isoform 2 (identifier: Q5ZDJ6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     145-145: Missing.

Note: May be due to a competing acceptor splice site. No experimental confirmation available.
Show »
Length:461
Mass (Da):50,230
Checksum:i96D7FDF784CF3C64
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_035016145Missing in isoform 2. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002897 Genomic DNA Translation: BAD61280.1
AP002897 Genomic DNA Translation: BAD61281.1
AP008207 Genomic DNA Translation: BAF05491.1
AP014957 Genomic DNA Translation: BAS73169.1
AP014957 Genomic DNA Translation: BAS73170.1
AK111682 mRNA Translation: BAG99366.1
AK112116 mRNA No translation available.
RefSeqiXP_015622282.1, XM_015766796.1 [Q5ZDJ6-1]
XP_015622283.1, XM_015766797.1 [Q5ZDJ6-2]
UniGeneiOs.1486

Genome annotation databases

EnsemblPlantsiOs01t0616400-01; Os01t0616400-01; Os01g0616400 [Q5ZDJ6-2]
Os01t0616400-02; Os01t0616400-02; Os01g0616400 [Q5ZDJ6-1]
GeneIDi4326652
GrameneiOs01t0616400-01; Os01t0616400-01; Os01g0616400 [Q5ZDJ6-2]
Os01t0616400-02; Os01t0616400-02; Os01g0616400 [Q5ZDJ6-1]
KEGGiosa:4326652

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiC3H8_ORYSJ
AccessioniPrimary (citable) accession number: Q5ZDJ6
Secondary accession number(s): B7F419, Q5ZDJ7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: May 23, 2018
This is version 81 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

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