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Entry version 94 (10 Feb 2021)
Sequence version 1 (23 Nov 2004)
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Protein

Elongation factor 1-gamma 3

Gene

Os06g0571400

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probably plays a role in anchoring the complex to other cellular components.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionElongation factor
Biological processProtein biosynthesis

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Elongation factor 1-gamma 3
Short name:
EF-1-gamma 3
Alternative name(s):
eEF-1B gamma 3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Os06g0571400, LOC_Os06g37440
ORF Names:OSJNBa0006A22.2, P0610D01.10
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6
  • UP000000763 Componenti: Chromosome 6

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002281241 – 416Elongation factor 1-gamma 3Add BLAST416

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q5Z627

PRoteomics IDEntifications database

More...
PRIDEi
Q5Z627

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q5Z627, OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

EF-1 is composed of four subunits: alpha, beta, delta, and gamma.

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q5Z627, 2 interactors

STRING: functional protein association networks

More...
STRINGi
4530.OS06T0571400-01

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q5Z627

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 82GST N-terminalAdd BLAST82
Domaini87 – 215GST C-terminalAdd BLAST129
Domaini256 – 416EF-1-gamma C-terminalPROSITE-ProRule annotationAdd BLAST161

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0867, Eukaryota
KOG1627, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_011226_3_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q5Z627

Identification of Orthologs from Complete Genome Data

More...
OMAi
QIDYEVY

Database of Orthologous Groups

More...
OrthoDBi
1341490at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.70.1010, 1 hit
3.40.30.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001662, EF1B_G_C
IPR036433, EF1B_G_C_sf
IPR010987, Glutathione-S-Trfase_C-like
IPR036282, Glutathione-S-Trfase_C_sf
IPR040079, Glutathione_S-Trfase
IPR004045, Glutathione_S-Trfase_N
IPR004046, GST_C
IPR036249, Thioredoxin-like_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00647, EF1G, 1 hit
PF00043, GST_C, 1 hit
PF02798, GST_N, 1 hit

Structure-Function Linkage Database

More...
SFLDi
SFLDS00019, Glutathione_Transferase_(cytos, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01183, EF1G, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47616, SSF47616, 1 hit
SSF52833, SSF52833, 1 hit
SSF89942, SSF89942, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50040, EF1G_C, 1 hit
PS50405, GST_CTER, 1 hit
PS50404, GST_NTER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q5Z627-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALVLHCGSG NKNAFKALIA AEYTGVKVEL TKNFEMGVSN KTPEFLKMNP
60 70 80 90 100
LGKIPVLETP EGAVFESNAI ARYVARLKDN SSLCGSSLID YSHIEQWMDF
110 120 130 140 150
SATEVDANIG RWLYPRLGFG PYVPVLEEFA ITSLKRSLGA LNTHLASNTY
160 170 180 190 200
LVGHSVTLAD IVMTCNLYYG FVRILIKSFT SEFPHVERYF WTMVNQPNFK
210 220 230 240 250
KVIGDFKQAE SVPPVQKKAA PPKESKAKEA KKEAPKEAPK PKVEASEEEE
260 270 280 290 300
APKPKPKNPL DLLPPSKMIL DEWKRLYSNT KTNFREIAIK GFWDMYDPEG
310 320 330 340 350
YSLWFCDYKY NDENTVSFVT MNKVGGFLQR MDLCRKYAFG KMLVIGSTPP
360 370 380 390 400
FKVKGLWLFR GQDIPKFVMD EVYDMELYEW TKVDLSDEAQ KERVNAMIED
410
QEPFEGEDLL DAKCFK
Length:416
Mass (Da):47,391
Last modified:November 23, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAD0C0B2451FBF83F
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP004729 Genomic DNA Translation: BAD61828.1
AP005460 Genomic DNA Translation: BAD61932.1
AP008212 Genomic DNA Translation: BAF19830.1
AP014962 Genomic DNA Translation: BAS98320.1
AK068226 mRNA Translation: BAG90811.1
AK103928 mRNA Translation: BAG96325.1
AY224444 mRNA Translation: AAO72563.1

NCBI Reference Sequences

More...
RefSeqi
XP_015643925.1, XM_015788439.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os06t0571400-01; Os06t0571400-01; Os06g0571400
Os06t0571400-02; Os06t0571400-02; Os06g0571400

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4341354

Gramene; a comparative resource for plants

More...
Gramenei
Os06t0571400-01; Os06t0571400-01; Os06g0571400
Os06t0571400-02; Os06t0571400-02; Os06g0571400

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4341354

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004729 Genomic DNA Translation: BAD61828.1
AP005460 Genomic DNA Translation: BAD61932.1
AP008212 Genomic DNA Translation: BAF19830.1
AP014962 Genomic DNA Translation: BAS98320.1
AK068226 mRNA Translation: BAG90811.1
AK103928 mRNA Translation: BAG96325.1
AY224444 mRNA Translation: AAO72563.1
RefSeqiXP_015643925.1, XM_015788439.1

3D structure databases

SMRiQ5Z627
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ5Z627, 2 interactors
STRINGi4530.OS06T0571400-01

Proteomic databases

PaxDbiQ5Z627
PRIDEiQ5Z627

Genome annotation databases

EnsemblPlantsiOs06t0571400-01; Os06t0571400-01; Os06g0571400
Os06t0571400-02; Os06t0571400-02; Os06g0571400
GeneIDi4341354
GrameneiOs06t0571400-01; Os06t0571400-01; Os06g0571400
Os06t0571400-02; Os06t0571400-02; Os06g0571400
KEGGiosa:4341354

Phylogenomic databases

eggNOGiKOG0867, Eukaryota
KOG1627, Eukaryota
HOGENOMiCLU_011226_3_0_1
InParanoidiQ5Z627
OMAiQIDYEVY
OrthoDBi1341490at2759

Gene expression databases

GenevisibleiQ5Z627, OS

Family and domain databases

Gene3Di3.30.70.1010, 1 hit
3.40.30.10, 1 hit
InterProiView protein in InterPro
IPR001662, EF1B_G_C
IPR036433, EF1B_G_C_sf
IPR010987, Glutathione-S-Trfase_C-like
IPR036282, Glutathione-S-Trfase_C_sf
IPR040079, Glutathione_S-Trfase
IPR004045, Glutathione_S-Trfase_N
IPR004046, GST_C
IPR036249, Thioredoxin-like_sf
PfamiView protein in Pfam
PF00647, EF1G, 1 hit
PF00043, GST_C, 1 hit
PF02798, GST_N, 1 hit
SFLDiSFLDS00019, Glutathione_Transferase_(cytos, 1 hit
SMARTiView protein in SMART
SM01183, EF1G, 1 hit
SUPFAMiSSF47616, SSF47616, 1 hit
SSF52833, SSF52833, 1 hit
SSF89942, SSF89942, 1 hit
PROSITEiView protein in PROSITE
PS50040, EF1G_C, 1 hit
PS50405, GST_CTER, 1 hit
PS50404, GST_NTER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiEF1G3_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5Z627
Secondary accession number(s): Q0DBE3, Q84PB9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: November 23, 2004
Last modified: February 10, 2021
This is version 94 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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