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Protein
Submitted name:

Heterogeneous nuclear ribonucleoprotein A1

Gene

hnrnpa1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • RNA binding Source: GO_Central

Keywordsi

Molecular functionRibonucleoproteinImported, RNA-bindingPROSITE-ProRule annotation, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-XTR-6803529 FGFR2 alternative splicing
R-XTR-72163 mRNA Splicing - Major Pathway
R-XTR-72203 Processing of Capped Intron-Containing Pre-mRNA

Names & Taxonomyi

Protein namesi
Submitted name:
Heterogeneous nuclear ribonucleoprotein A1Imported
Gene namesi
Name:hnrnpa1Imported
Synonyms:hnrpa1Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-493963 hnrnpa1

Subcellular locationi

Keywords - Cellular componenti

Virion

Expressioni

Gene expression databases

BgeeiENSXETG00000021277 Expressed in 11 organ(s), highest expression level in gastrula

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 94RRMInterPro annotationAdd BLAST84
Domaini102 – 181RRMInterPro annotationAdd BLAST80

Phylogenomic databases

GeneTreeiENSGT00900000140828
HOGENOMiHOG000234442
HOVERGENiHBG002295
KOiK12741
OMAiGAHITVK

Family and domain databases

CDDicd12761 RRM1_hnRNPA1, 1 hit
cd12580 RRM2_hnRNPA1, 1 hit
Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR034845 hnRNPA1_RRM1
IPR034803 hnRNPA1_RRM2
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q5XGF4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHKSEEPEQL RKLFIGGLSF ETTDESLREH FEQWGTLTDC VVMRDPNSKR
60 70 80 90 100
SRGFGFVTYS STDEVDAAMS ARPHKVDGRV VEPKRAVSRE DSSRPGAHLT
110 120 130 140 150
VKKIFVGGIK EDTEEHHLRE YFEQYGKIEV IEIMTDRGSG KKRGFAFVTF
160 170 180 190 200
EDHDSVDKIV IQKYHTVNNH NCEVRKALSK QEMASVSGSQ RGRGGSGNFS
210 220 230 240 250
GRGGFGNDNF GGRGGNFSSN RGGGFGNRGY GGDGYNGFGN DGGYGGSPPY
260 270 280 290 300
SGGNRGYGGG GGQGYGGGQG GGYGGGNGGY DGYNGGGSGF GGSGGNFGGS
310 320 330 340
GGGGGGYNDF GNYNNQSSSS FGPMKGGNYG GGRNSGPYGG SNA
Length:343
Mass (Da):35,824
Last modified:November 23, 2004 - v1
Checksum:i736B9FCF289F4320
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6XNZ3F6XNZ3_XENTR
Heterogeneous nuclear ribonucleopro...
hnrnpa1
357Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01048481 Genomic DNA No translation available.
BC084487 mRNA Translation: AAH84487.1
RefSeqiNP_001011094.1, NM_001011094.1
UniGeneiStr.3054

Genome annotation databases

EnsembliENSXETT00000046024; ENSXETP00000046024; ENSXETG00000021277
GeneIDi496507
KEGGixtr:496507

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01048481 Genomic DNA No translation available.
BC084487 mRNA Translation: AAH84487.1
RefSeqiNP_001011094.1, NM_001011094.1
UniGeneiStr.3054

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000046024; ENSXETP00000046024; ENSXETG00000021277
GeneIDi496507
KEGGixtr:496507

Organism-specific databases

CTDi3178
XenbaseiXB-GENE-493963 hnrnpa1

Phylogenomic databases

GeneTreeiENSGT00900000140828
HOGENOMiHOG000234442
HOVERGENiHBG002295
KOiK12741
OMAiGAHITVK

Enzyme and pathway databases

ReactomeiR-XTR-6803529 FGFR2 alternative splicing
R-XTR-72163 mRNA Splicing - Major Pathway
R-XTR-72203 Processing of Capped Intron-Containing Pre-mRNA

Gene expression databases

BgeeiENSXETG00000021277 Expressed in 11 organ(s), highest expression level in gastrula

Family and domain databases

CDDicd12761 RRM1_hnRNPA1, 1 hit
cd12580 RRM2_hnRNPA1, 1 hit
Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR034845 hnRNPA1_RRM1
IPR034803 hnRNPA1_RRM2
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ5XGF4_XENTR
AccessioniPrimary (citable) accession number: Q5XGF4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: November 7, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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