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Protein
Submitted name:

Heterogeneous nuclear ribonucleoprotein A1

Gene

hnrnpa1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoproteinImported, RNA-bindingPROSITE-ProRule annotation, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-XTR-6803529 FGFR2 alternative splicing
R-XTR-72163 mRNA Splicing - Major Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
Heterogeneous nuclear ribonucleoprotein A1Imported
Gene namesi
Name:hnrnpa1Imported
Synonyms:hnrpa1Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-493963 hnrnpa1

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Expressioni

    Gene expression databases

    BgeeiENSXETG00000021277

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini11 – 94RRMInterPro annotationAdd BLAST84
    Domaini102 – 181RRMInterPro annotationAdd BLAST80

    Phylogenomic databases

    GeneTreeiENSGT00900000140828
    HOGENOMiHOG000234442
    HOVERGENiHBG002295
    KOiK12741
    OMAiTINGHNS

    Family and domain databases

    CDDicd12761 RRM1_hnRNPA1, 1 hit
    cd12580 RRM2_hnRNPA1, 1 hit
    Gene3Di3.30.70.330, 2 hits
    InterProiView protein in InterPro
    IPR034845 hnRNPA1_RRM1
    IPR034803 hnRNPA1_RRM2
    IPR012677 Nucleotide-bd_a/b_plait_sf
    IPR035979 RBD_domain_sf
    IPR000504 RRM_dom
    PfamiView protein in Pfam
    PF00076 RRM_1, 2 hits
    SMARTiView protein in SMART
    SM00360 RRM, 2 hits
    SUPFAMiSSF54928 SSF54928, 2 hits
    PROSITEiView protein in PROSITE
    PS50102 RRM, 2 hits

    Sequencei

    Sequence statusi: Complete.

    Q5XGF4-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MHKSEEPEQL RKLFIGGLSF ETTDESLREH FEQWGTLTDC VVMRDPNSKR
    60 70 80 90 100
    SRGFGFVTYS STDEVDAAMS ARPHKVDGRV VEPKRAVSRE DSSRPGAHLT
    110 120 130 140 150
    VKKIFVGGIK EDTEEHHLRE YFEQYGKIEV IEIMTDRGSG KKRGFAFVTF
    160 170 180 190 200
    EDHDSVDKIV IQKYHTVNNH NCEVRKALSK QEMASVSGSQ RGRGGSGNFS
    210 220 230 240 250
    GRGGFGNDNF GGRGGNFSSN RGGGFGNRGY GGDGYNGFGN DGGYGGSPPY
    260 270 280 290 300
    SGGNRGYGGG GGQGYGGGQG GGYGGGNGGY DGYNGGGSGF GGSGGNFGGS
    310 320 330 340
    GGGGGGYNDF GNYNNQSSSS FGPMKGGNYG GGRNSGPYGG SNA
    Length:343
    Mass (Da):35,824
    Last modified:November 23, 2004 - v1
    Checksum:i736B9FCF289F4320
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AAMC01048481 Genomic DNA No translation available.
    BC084487 mRNA Translation: AAH84487.1
    RefSeqiNP_001011094.1, NM_001011094.1
    UniGeneiStr.3054

    Genome annotation databases

    EnsembliENSXETT00000046024; ENSXETP00000046024; ENSXETG00000021277
    GeneIDi496507
    KEGGixtr:496507

    Similar proteinsi

    Entry informationi

    Entry nameiQ5XGF4_XENTR
    AccessioniPrimary (citable) accession number: Q5XGF4
    Entry historyiIntegrated into UniProtKB/TrEMBL: November 23, 2004
    Last sequence update: November 23, 2004
    Last modified: June 20, 2018
    This is version 105 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

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