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Entry version 140 (12 Aug 2020)
Sequence version 1 (23 Nov 2004)
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Protein

Genome polyprotein

Gene
N/A
Organism
Usutu virus (USUV)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Plays a role in virus budding by binding to the cell membrane and gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle. During virus entry, may induce genome penetration into the host cytoplasm after hemifusion induced by the surface proteins. Can migrate to the cell nucleus where it modulates host functions. Overcomes the anti-viral effects of host EXOC1 by sequestering and degrading the latter through the proteasome degradation pathway.By similarity
Inhibits RNA silencing by interfering with host Dicer.By similarity
Prevents premature fusion activity of envelope proteins in trans-Golgi by binding to envelope protein E at pH6.0. After virion release in extracellular space, gets dissociated from E dimers.By similarity
Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is the only viral peptide matured by host furin in the trans-Golgi network probably to avoid catastrophic activation of the viral fusion activity in acidic Golgi compartment prior to virion release. prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion.By similarity
May play a role in virus budding. Exerts cytotoxic effects by activating a mitochondrial apoptotic pathway through M ectodomain. May display a viroporin activity.By similarity
Binds to host cell surface receptor and mediates fusion between viral and cellular membranes. Envelope protein is synthesized in the endoplasmic reticulum in the form of heterodimer with protein prM. They play a role in virion budding in the ER, and the newly formed immature particle is covered with 60 spikes composed of heterodimer between precursor prM and envelope protein E. The virion is transported to the Golgi apparatus where the low pH causes dissociation of PrM-E heterodimers and formation of E homodimers. prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion.By similarity
Involved in immune evasion, pathogenesis and viral replication. Once cleaved off the polyprotein, is targeted to three destinations: the viral replication cycle, the plasma membrane and the extracellular compartment. Essential for viral replication. Required for formation of the replication complex and recruitment of other non-structural proteins to the ER-derived membrane structures. Excreted as a hexameric lipoparticle that plays a role against host immune response. Antagonizing the complement function. Binds to the host macrophages and dendritic cells. Inhibits signal transduction originating from Toll-like receptor 3 (TLR3).By similarity
Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host alpha/beta interferon antiviral response.By similarity
Required cofactor for the serine protease function of NS3. May have membrane-destabilizing activity and form viroporins (By similarity).PROSITE-ProRule annotationBy similarity
Displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction.PROSITE-ProRule annotation
Regulates the ATPase activity of the NS3 helicase activity. NS4A allows NS3 helicase to conserve energy during unwinding.By similarity
Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.By similarity
Induces the formation of ER-derived membrane vesicles where the viral replication takes place. Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway. Inhibits STAT2 translocation in the nucleus after IFN-alpha treatment.By similarity
Replicates the viral (+) and (-) RNA genome, and performs the capping of genomes in the cytoplasm. NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions. Besides its role in RNA genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway. Inhibits host TYK2 and STAT2 phosphorylation, thereby preventing activation of JAK-STAT signaling pathway.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Selective hydrolysis of -Xaa-Xaa-|-Yaa- bonds in which each of the Xaa can be either Arg or Lys and Yaa can be either Ser or Ala. EC:3.4.21.91

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1554Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1578Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1638Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei1961Involved in NS3 ATPase and RTPase activitiesBy similarity1
Sitei1964Involved in NS3 ATPase and RTPase activitiesBy similarity1
Sitei2542mRNA cap bindingPROSITE-ProRule annotation1
Sitei2545mRNA cap binding; via carbonyl oxygenPROSITE-ProRule annotation1
Sitei2546mRNA cap bindingPROSITE-ProRule annotation1
Sitei2548mRNA cap binding; via carbonyl oxygenPROSITE-ProRule annotation1
Sitei2553mRNA cap bindingPROSITE-ProRule annotation1
Sitei2557mRNA cap bindingPROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei2585S-adenosyl-L-methioninePROSITE-ProRule annotation1
Active sitei2590For 2'-O-MTase activityBy similarity1
Sitei2590Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2615S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2616S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2633S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei2634S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2660S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei2661S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Active sitei2675For 2'-O-MTase activityBy similarity1
Sitei2675Essential for 2'-O-methyltransferase and N-7 methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2676S-adenosyl-L-methioninePROSITE-ProRule annotation1
Sitei2679mRNA cap bindingPROSITE-ProRule annotation1
Active sitei2711For 2'-O-MTase activityBy similarity1
Sitei2711Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Sitei2742mRNA cap bindingPROSITE-ProRule annotation1
Sitei2744mRNA cap bindingPROSITE-ProRule annotation1
Active sitei2747For 2'-O-MTase activityBy similarity1
Sitei2747Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2749S-adenosyl-L-methioninePROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi2969Zinc 1By similarity1
Metal bindingi2973Zinc 1; via tele nitrogenBy similarity1
Metal bindingi2978Zinc 1By similarity1
Metal bindingi2981Zinc 1By similarity1
Metal bindingi3246Zinc 2; via tele nitrogenBy similarity1
Metal bindingi3262Zinc 2By similarity1
Metal bindingi3381Zinc 2By similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi1697 – 1704ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Methyltransferase, Nucleotidyltransferase, Protease, RNA-binding, RNA-directed RNA polymerase, Serine protease, Suppressor of RNA silencing, Transferase
Biological processActivation of host autophagy by virus, Clathrin-mediated endocytosis of virus by host, Fusion of virus membrane with host endosomal membrane, Fusion of virus membrane with host membrane, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host interferon signaling pathway by virus, Inhibition of host STAT1 by virus, Inhibition of host STAT2 by virus, Inhibition of host TYK2 by virus, mRNA capping, mRNA processing, Transcription, Transcription regulation, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus endocytosis by host, Virus entry into host cell
LigandATP-binding, Metal-binding, Nucleotide-binding, S-adenosyl-L-methionine, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyprotein
Cleaved into the following 13 chains:
Alternative name(s):
Core protein
Alternative name(s):
Matrix protein
Alternative name(s):
Flavivirin protease NS2B regulatory subunit
Non-structural protein 2B
Serine protease NS3 (EC:3.4.21.91, EC:3.6.1.15, EC:3.6.4.13)
Alternative name(s):
Flavivirin protease NS3 catalytic subunit
Non-structural protein 3
RNA-directed RNA polymerase NS5 (EC:2.1.1.56PROSITE-ProRule annotation, EC:2.1.1.57PROSITE-ProRule annotation, EC:2.7.7.48PROSITE-ProRule annotation)
Alternative name(s):
Non-structural protein 5
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiUsutu virus (USUV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri64286 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaFlaviviridaeFlavivirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiAedes albopictus (Asian tiger mosquito) (Stegomyia albopicta) [TaxID: 7160]
Anopheles maculipennis [TaxID: 41429]
Coquillettidia aurites [TaxID: 653291]
Culex neavei [TaxID: 864528]
Culex perexiguus [TaxID: 943103]
Culex pipiens (House mosquito) [TaxID: 7175]
Homo sapiens (Human) [TaxID: 9606]
Mansonia africana [TaxID: 667564]
Ochlerotatus caspius [TaxID: 120870]
Turdus merula (Common blackbird) [TaxID: 9187]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000170913 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 106CytoplasmicSequence analysisAdd BLAST106
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei107 – 126HelicalSequence analysisAdd BLAST20
Topological domaini127 – 248ExtracellularSequence analysisAdd BLAST122
Transmembranei249 – 273HelicalSequence analysisAdd BLAST25
Topological domaini274 – 278CytoplasmicSequence analysis5
Transmembranei279 – 293HelicalCuratedAdd BLAST15
Topological domaini294 – 745ExtracellularSequence analysisAdd BLAST452
Transmembranei746 – 766HelicalSequence analysisAdd BLAST21
Topological domaini767 – 772CytoplasmicSequence analysis6
Transmembranei773 – 793HelicalSequence analysisAdd BLAST21
Topological domaini794 – 1218ExtracellularSequence analysisAdd BLAST425
Transmembranei1219 – 1239HelicalSequence analysisAdd BLAST21
Topological domaini1240 – 1249CytoplasmicSequence analysis10
Transmembranei1250 – 1270HelicalSequence analysisAdd BLAST21
Topological domaini1271 – 1286LumenalSequence analysisAdd BLAST16
Transmembranei1287 – 1307HelicalSequence analysisAdd BLAST21
Topological domaini1308CytoplasmicSequence analysis1
Transmembranei1309 – 1329HelicalSequence analysisAdd BLAST21
Topological domaini1330 – 1340LumenalSequence analysisAdd BLAST11
Transmembranei1341 – 1361HelicalSequence analysisAdd BLAST21
Topological domaini1362 – 1373CytoplasmicSequence analysisAdd BLAST12
Transmembranei1374 – 1394HelicalSequence analysisAdd BLAST21
Topological domaini1395 – 1397LumenalSequence analysis3
Transmembranei1398 – 1418HelicalSequence analysisAdd BLAST21
Topological domaini1419 – 1475CytoplasmicSequence analysisAdd BLAST57
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a region that is buried within a membrane, but does not cross it.<p><a href='/help/intramem' target='_top'>More...</a></p>Intramembranei1476 – 1496HelicalSequence analysisAdd BLAST21
Topological domaini1497 – 2173CytoplasmicSequence analysisAdd BLAST677
Transmembranei2174 – 2194HelicalSequence analysisAdd BLAST21
Topological domaini2195 – 2198LumenalSequence analysis4
Intramembranei2199 – 2219HelicalSequence analysisAdd BLAST21
Topological domaini2220LumenalSequence analysis1
Transmembranei2221 – 2241HelicalSequence analysisAdd BLAST21
Topological domaini2242 – 2256CytoplasmicSequence analysisAdd BLAST15
Transmembranei2257 – 2277Helical; Note=Signal for NS4BSequence analysisAdd BLAST21
Topological domaini2278 – 2313LumenalSequence analysisAdd BLAST36
Intramembranei2314 – 2334HelicalSequence analysisAdd BLAST21
Topological domaini2335 – 2368LumenalSequence analysisAdd BLAST34
Transmembranei2369 – 2389HelicalSequence analysisAdd BLAST21
Topological domaini2390 – 2446CytoplasmicSequence analysisAdd BLAST57
Transmembranei2447 – 2467HelicalSequence analysisAdd BLAST21
Topological domaini2468 – 2471LumenalSequence analysis4
Transmembranei2472 – 2492HelicalSequence analysisAdd BLAST21
Topological domaini2493 – 3434CytoplasmicSequence analysisAdd BLAST942

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Host endoplasmic reticulum, Host membrane, Host nucleus, Membrane, Secreted, Viral envelope protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004415611 – 3434Genome polyproteinAdd BLAST3434
ChainiPRO_00004415621 – 104Capsid protein CBy similarityAdd BLAST104
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section describes a propeptide, which is a part of a protein that is cleaved during maturation or activation. Once cleaved, a propeptide generally has no independent biological function.<p><a href='/help/propep' target='_top'>More...</a></p>PropeptideiPRO_0000441563105 – 126ER anchor for the capsid protein C, removed in mature form by serine protease NS3By similarityAdd BLAST22
ChainiPRO_0000441564127 – 293Protein prMBy similarityAdd BLAST167
ChainiPRO_0000441565127 – 218Peptide prBy similarityAdd BLAST92
ChainiPRO_0000441566219 – 293Small envelope protein MBy similarityAdd BLAST75
ChainiPRO_0000441567294 – 793Envelope protein EBy similarityAdd BLAST500
ChainiPRO_0000441568794 – 1145Non-structural protein 1By similarityAdd BLAST352
ChainiPRO_00004415691146 – 1372Non-structural protein 2ABy similarityAdd BLAST227
ChainiPRO_00004415701373 – 1503Serine protease subunit NS2BBy similarityAdd BLAST131
ChainiPRO_00004415711504 – 2122Serine protease NS3By similarityAdd BLAST619
ChainiPRO_00004415722123 – 2248Non-structural protein 4ABy similarityAdd BLAST126
<p>This subsection of the 'PTM / Processing' section describes the position and length of an active peptide in the mature protein.<p><a href='/help/peptide' target='_top'>More...</a></p>PeptideiPRO_00004415732249 – 2271Peptide 2kBy similarityAdd BLAST23
ChainiPRO_00004415742272 – 2529Non-structural protein 4BBy similarityAdd BLAST258
ChainiPRO_00004415752530 – 3434RNA-directed RNA polymerase NS5By similarityAdd BLAST905

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi141N-linked (GlcNAc...) asparagine; by hostBy similarity1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi296 ↔ 323By similarity
Disulfide bondi353 ↔ 414By similarity
Disulfide bondi353 ↔ 409By similarity
Disulfide bondi367 ↔ 398By similarity
Disulfide bondi385 ↔ 414By similarity
Disulfide bondi385 ↔ 409By similarity
Disulfide bondi483 ↔ 580By similarity
Disulfide bondi597 ↔ 628By similarity
Disulfide bondi797 ↔ 808By similarity
Disulfide bondi848 ↔ 936By similarity
Glycosylationi923N-linked (GlcNAc...) asparagine; by hostBy similarity1
Glycosylationi968N-linked (GlcNAc...) asparagine; by hostBy similarity1
Disulfide bondi972 ↔ 1016By similarity
Glycosylationi1000N-linked (GlcNAc...) asparagine; by hostBy similarity1
Disulfide bondi1073 ↔ 1122By similarity
Disulfide bondi1084 ↔ 1106By similarity
Disulfide bondi1084 ↔ 1105By similarity
Disulfide bondi1105 ↔ 1109By similarity
Disulfide bondi1106 ↔ 1109By similarity
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2585PhosphoserineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Specific enzymatic cleavages in vivo yield mature proteins. Cleavages in the lumen of endoplasmic reticulum are performed by host signal peptidase, whereas cleavages in the cytoplasmic side are performed by serine protease NS3. Signal cleavage at the 2K-4B site requires a prior NS3 protease-mediated cleavage at the 4A-2K site.By similarity
Cleaved in post-Golgi vesicles by a host furin, releasing the mature small envelope protein M, and peptide pr. This cleavage is incomplete as up to 30% of viral particles still carry uncleaved prM.By similarity
N-glycosylated.By similarity
N-glycosylated. The excreted form is glycosylated and this is required for efficient secretion of the protein from infected cells.By similarity
Phosphorylated on serines residues. This phosphorylation may trigger NS5 nuclear localization.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei104 – 105Cleavage; by viral protease NS3By similarity2
Sitei126 – 127Cleavage; by host signal peptidaseBy similarity2
Sitei218 – 219Cleavage; by host furinBy similarity2
Sitei293 – 294Cleavage; by host signal peptidaseBy similarity2
Sitei793 – 794Cleavage; by host signal peptidaseBy similarity2
Sitei1145 – 1146Cleavage; by hostBy similarity2
Sitei1372 – 1373Cleavage; by viral protease NS3By similarity2
Sitei1503 – 1504Cleavage; by autolysisBy similarity2
Sitei2122 – 2123Cleavage; by autolysisBy similarity2
Sitei2248 – 2249Cleavage; by viral protease NS3By similarity2
Sitei2271 – 2272Cleavage; by host signal peptidaseBy similarity2
Sitei2529 – 2530Cleavage; by viral protease NS3By similarity2

Keywords - PTMi

Cleavage on pair of basic residues, Disulfide bond, Glycoprotein, Phosphoprotein

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer (By similarity).

Interacts (via N-terminus) with host EXOC1 (via C-terminus); this interaction results in EXOC1 degradation through the proteasome degradation pathway (By similarity).

By similarity

Forms heterodimers with envelope protein E in the endoplasmic reticulum and Golgi.

By similarity

Homodimer; in the endoplasmic reticulum and Golgi (By similarity).

Interacts with protein prM (By similarity).

Interacts with non-structural protein 1 (By similarity).

By similarity

Homodimer; Homohexamer when secreted (By similarity).

Interacts with envelope protein E (By similarity). NS1 interacts with NS4B (By similarity).

Interacts with host complement protein CFH; this interaction leads to the degradation of C3 (By similarity).

By similarity

Interacts (via N-terminus) with serine protease NS3.

By similarity

Forms a heterodimer with serine protease NS3 (By similarity). May form homooligomers (By similarity).

By similarity

Forms a heterodimer with NS2B (By similarity).

Interacts with non-structural protein 2A (via N-terminus) (By similarity).

Interacts with NS4B (By similarity).

Interacts with unphosphorylated RNA-directed RNA polymerase NS5; this interaction stimulates RNA-directed RNA polymerase NS5 guanylyltransferase activity (By similarity).

By similarity

Interacts with serine protease NS3 (By similarity).

By similarity

Homodimer.

Interacts with host STAT2; this interaction inhibits the phosphorylation of the latter, and, when all viral proteins are present (polyprotein), targets STAT2 for degradation.

Interacts with serine protease NS3.

By similarity

GO - Molecular functioni

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

13434
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q5WPU5

Database of comparative protein structure models

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ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1504 – 1681Peptidase S7PROSITE-ProRule annotationAdd BLAST178
Domaini1684 – 1840Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST157
Domaini1851 – 2016Helicase C-terminalPROSITE-ProRule annotationAdd BLAST166
Domaini2530 – 2795mRNA cap 0-1 NS5-type MTPROSITE-ProRule annotationAdd BLAST266
Domaini3059 – 3211RdRp catalyticPROSITE-ProRule annotationAdd BLAST153

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni2 – 15Interaction with host EXOC1By similarityAdd BLAST14
Regioni37 – 72Hydrophobic; homodimerization of capsid protein CBy similarityAdd BLAST36
Regioni391 – 404Fusion peptideBy similarityAdd BLAST14
Regioni1426 – 1465Interacts with and activates NS3 proteasePROSITE-ProRule annotationAdd BLAST40
Regioni1688 – 1691Important for RNA-bindingBy similarity4
Regioni2167 – 2171Regulates the ATPase activity of NS3 helicaseBy similarity5

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi1788 – 1791DEAH boxPROSITE-ProRule annotation4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi284 – 287Poly-LeuSequence analysis4

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The transmembrane domains of the small envelope protein M and envelope protein E contain an endoplasmic reticulum retention signal.By similarity

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the N-terminal section; belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0-1 NS5-type methyltransferase family.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Conserved Domains Database

More...
CDDi
cd12149, Flavi_E_C, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.10.10.930, 1 hit
1.10.8.970, 1 hit
1.20.1280.260, 1 hit
2.40.10.10, 1 hit
2.60.260.50, 1 hit
2.60.40.350, 1 hit
2.60.98.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011492, DEAD_Flavivir
IPR043502, DNA/RNA_pol_sf
IPR000069, Env_glycoprot_M_flavivir
IPR038302, Env_glycoprot_M_sf_flavivir
IPR001122, Flavi_capsidC
IPR037172, Flavi_capsidC_sf
IPR027287, Flavi_E_Ig-like
IPR026470, Flavi_E_Stem/Anchor_dom
IPR038345, Flavi_E_Stem/Anchor_dom_sf
IPR001157, Flavi_NS1
IPR000752, Flavi_NS2A
IPR000487, Flavi_NS2B
IPR000404, Flavi_NS4A
IPR001528, Flavi_NS4B
IPR002535, Flavi_propep
IPR038688, Flavi_propep_sf
IPR000336, Flavivir/Alphavir_Ig-like_sf
IPR001850, Flavivirus_NS3_S7
IPR014412, Gen_Poly_FLV
IPR011998, Glycoprot_cen/dimer
IPR036253, Glycoprot_cen/dimer_sf
IPR038055, Glycoprot_E_dimer_dom
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR014756, Ig_E-set
IPR026490, mRNA_cap_0/1_MeTrfase
IPR027417, P-loop_NTPase
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR000208, RNA-dir_pol_flavivirus
IPR007094, RNA-dir_pol_PSvirus
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR029063, SAM-dependent_MTases

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01003, Flavi_capsid, 1 hit
PF07652, Flavi_DEAD, 1 hit
PF02832, Flavi_glycop_C, 1 hit
PF00869, Flavi_glycoprot, 1 hit
PF01004, Flavi_M, 1 hit
PF00948, Flavi_NS1, 1 hit
PF01005, Flavi_NS2A, 1 hit
PF01002, Flavi_NS2B, 1 hit
PF01350, Flavi_NS4A, 1 hit
PF01349, Flavi_NS4B, 1 hit
PF00972, Flavi_NS5, 1 hit
PF01570, Flavi_propep, 1 hit
PF01728, FtsJ, 1 hit
PF00949, Peptidase_S7, 1 hit

PIRSF; a whole-protein classification database

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PIRSFi
PIRSF003817, Gen_Poly_FLV, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00487, DEXDc, 1 hit
SM00490, HELICc, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF101257, SSF101257, 1 hit
SSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF53335, SSF53335, 1 hit
SSF56672, SSF56672, 1 hit
SSF56983, SSF56983, 1 hit
SSF81296, SSF81296, 1 hit

TIGRFAMs; a protein family database

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TIGRFAMsi
TIGR04240, flavi_E_stem, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51527, FLAVIVIRUS_NS2B, 1 hit
PS51528, FLAVIVIRUS_NS3PRO, 1 hit
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51591, RNA_CAP01_NS5_MT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q5WPU5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSKKPGGPGR NRAINMLKRG IPRVFPLVGV KRVVMGLLDG RGPVRFVLAL
60 70 80 90 100
MTFFKFTALA PTKALLGRWK RINKTTAMKH LTSFKKELGT MINVVNNRGT
110 120 130 140 150
KKKRGNNGPG LVMIITLMTV VSMVSSLKLS NFQGKVMMTI NATDMADVIV
160 170 180 190 200
VPTQHGKNQC WIRAMDVGYM CDDTITYECP KLDAGNDPED IDCWCDKQPM
210 220 230 240 250
YVHYGRCTRT RHSKRSRRSI AVQTHGESML ANKKDAWLDS TKASRYLMKT
260 270 280 290 300
ENWIIRNPGY AFVAVLLGWM LGSNNGQRVV FVVLLLLVAP AYSFNCLGMS
310 320 330 340 350
NRDFLEGVSG ATWVDVVLEG DSCITIMAKD KPTIDIKMME TEATNLAEVR
360 370 380 390 400
SYCYLATVSD VSTVSNCPTT GEAHNPKRAE DTYVCKSGVT DRGWGNGCGL
410 420 430 440 450
FGKGSIDTCA NFTCSLKAMG RMIQPENVKY EVGIFIHGST SSDTHGNYSS
460 470 480 490 500
QLGASQAGRF TITPNSPAIT VKMGDYGEIS VECEPRNGLN TEAYYIMSVG
510 520 530 540 550
TKHFLVHREW FNDLALPWTS PASSNWRNRE ILLEFEEPHA TKQSVVALGS
560 570 580 590 600
QEGALHQALA GAVPVSFSGS VKLTSGHLKC RVKMEKLTLK GTTYGMCTEK
610 620 630 640 650
FSFAKNPADT GHGTVVLELQ YTGSDGPCKI PISIVASLSD LTPIGRMVTA
660 670 680 690 700
NPYVASSEAN AKVLVEMEPP FGDSYIVVGR GDKQINHHWH KAGSSIGKAF
710 720 730 740 750
ITTIKGAQRL AALGDTAWDF GSVGGIFNSV GKAVHQVFGG AFRTLFGGMS
760 770 780 790 800
WITQGLMGAL LLWMGVNARD RSIALVMLAT GGVLLFLATN VHADSGCAID
810 820 830 840 850
VGRRELRCGQ GIFIHNDVEA WVDRYKFMPE TPKQLAKVIE QAHAKGICGL
860 870 880 890 900
RSVSRLEHVM WENIRDELNT LLRENAVDLS VVVEKPKGMY KSAPQRLALT
910 920 930 940 950
SEEFEIGWKA WGKSLVFAPE LANHTFVVDG PETKECPDAK RAWNSLEIED
960 970 980 990 1000
FGFGIMSTRV WLKVREHNTT DCDSSIIGTA VKGDIAVHSD LSYWIESHKN
1010 1020 1030 1040 1050
TTWRLERAVF GEIKSCTWPE THTLWSDGVV ESDLVVPVTL AGPKSNHNRR
1060 1070 1080 1090 1100
EGYKVQSQGP WDEEDIVLDF DYCPGTTVTI TEACGKRGPS IRTTTSSGRL
1110 1120 1130 1140 1150
VTDWCCRSCT LPPLRYRTKN GCWYGMEIRP MKHDETTLVK SSVSAHRSDM
1160 1170 1180 1190 1200
IDPFQLGLLV MFLATQEVLR KRWTARLTVP AIVGALLVLI LGGITYTDLL
1210 1220 1230 1240 1250
RYVLLVGAAF AEANSGGDVV HLALIAAFKI QPGFLAMTFL RGKWTNQENI
1260 1270 1280 1290 1300
LLALGAAFFQ MAATDLNFSL PGILNATATA WMLLRAATQP STSAIVMPLL
1310 1320 1330 1340 1350
CLLAPGMRLL YLDTYRITLI IIGICSLIGE RRRAAAKKKG AVLLGLALTS
1360 1370 1380 1390 1400
TGQFSASVMA AGLMACNPNK KRGWPATEVL TAVGLMFAIV GGLAELDVDS
1410 1420 1430 1440 1450
MSIPFVLAGL MAVSYTISGK STDLWLERAA DITWETDAAI TGTSQRLDVK
1460 1470 1480 1490 1500
LDDDGDFHLI NDPGVPWKIW VIRMTALGFA AWTPWAIIPA GIGYWLTVKY
1510 1520 1530 1540 1550
AKRGGVFWDT PAPRTYPKGD TSPGVYRIMS RYILGTYQAG VGVMYEGVLH
1560 1570 1580 1590 1600
TLWHTTRGAA IRSGEGRLTP YWGSVKEDRI TYGGPWKFDR KWNGLDDVQL
1610 1620 1630 1640 1650
IIVAPGKAAI NIQTKPGIFK TPQGEIGAVS LDYPEGTSGS PILDKNGDIV
1660 1670 1680 1690 1700
GLYGNGVILG NGSYVSAIVQ GEREEEPVPE AYNADMLRKK QLTVLDLHPG
1710 1720 1730 1740 1750
AGKTRRILPQ IIKDAIQRRL RTAVLAPTRV VAAEMAEALK GLPVRYLTPA
1760 1770 1780 1790 1800
VNREHSGTEI VDVMCHATLT HRLMSPLRAP NYNLFVMDEA HFTDPASIAA
1810 1820 1830 1840 1850
RGYIATKVEL GEAAAIFMTA TPPGTHDPFP DTNAPVTDIQ AEVPDRAWSS
1860 1870 1880 1890 1900
GFEWITEYTG KTVWFVASVK MGNEIAQCLQ RAGKKVIQLN RKSYDTEYPK
1910 1920 1930 1940 1950
CKNGDWDFVI TTDISEMGAN FGASRVIDCR KSVKPTILEE GEGRVILSNP
1960 1970 1980 1990 2000
SPITSASAAQ RRGRVGRNPS QIGDEYHYGG GTSEDDTIAA HWTEAKIMLD
2010 2020 2030 2040 2050
NIHLPNGLVA QMYGPERDKA FTMDGEYRLR GEERKTFLEL LRTADLPVWL
2060 2070 2080 2090 2100
AYKVASNGIQ YTDRKWCFDG PRSNIILEDN NEVEIVTRTG ERKMLKPRWL
2110 2120 2130 2140 2150
DARVYADHQS LKWFKDFAAG KRSAVGFLEV LGRMPEHFAG KTREAFDTMY
2160 2170 2180 2190 2200
LVATAEKGGK AHRMALEELP DALETITLIV ALAVMTAGVF LLLVQRRGIG
2210 2220 2230 2240 2250
KLGLGGMVLG LATFFLWMAD VSGTKIAGTL LLALLMMIVL IPEPEKQRSQ
2260 2270 2280 2290 2300
TDNQLAVFLI CVLLVVGVVA ANEYGMLERT KSDLGKIFSS TRQPQSALPL
2310 2320 2330 2340 2350
PSMNALALDL RPATAWALYG GSTVVLTPLI KHLVTSEYIT TSLASISAQA
2360 2370 2380 2390 2400
GSLFNLPRGL PFTELDFTVV LVFLGCWGQV SLTTLITAAA LATLHYGYML
2410 2420 2430 2440 2450
PGWQAEALRA AQRRTAAGIM KNAVVDGLVA TDVPELERTT PLMQKKVGQI
2460 2470 2480 2490 2500
LLIGVSAAAL LVNPCVTTVR EAGILISAAL LTLWDNGAIA VWNSTTATGL
2510 2520 2530 2540 2550
CHVIRGNWLA GASIAWTLIK NADKPACKRG RPGGRTLGEQ WKEKLNGLSK
2560 2570 2580 2590 2600
EDFLKYRKEA ITEVDRSAAR KARRDGNKTG GHPVSRGSAK LRWMVERQFV
2610 2620 2630 2640 2650
KPIGKVVDLG CGRGGWSYYA ATLKGVQEVR GYTKGGPGHE EPMLMQSYGW
2660 2670 2680 2690 2700
NLVTMKSGVD VYYKPSEPCD TLFCDIGESS SSAEVEEQRT LRILEMVSDW
2710 2720 2730 2740 2750
LQRGPREFCI KVLCPYMPRV MERLEVLQRR YGGGLVRVPL SRNSNHEMYW
2760 2770 2780 2790 2800
VSGAAGNIVH AVNMTSQVLI GRMEKRTWHG PKYEEDVNLG SGTRAVGKPQ
2810 2820 2830 2840 2850
PHTNQEKIKA RIQRLKEEYA ATWHHDKDHP YRTWTYHGSY EVKPTGSASS
2860 2870 2880 2890 2900
LVNGVVRLMS KPWDAILNVT TMAMTDTTPF GQQRVFKEKV DTKAPEPPSG
2910 2920 2930 2940 2950
VREVMDETTN WLWAFLAREK KPRLCTREEF KRKVNSNAAL GAMFEEQNQW
2960 2970 2980 2990 3000
SSAREAVEDP RFWEMVDEER ENHLKGECHT CIYNMMGKRE KKLGEFGKAK
3010 3020 3030 3040 3050
GSRAIWFMWL GARFLEFEAL GFLNEDHWLG RKNSGGGVEG LGVQKLGYIL
3060 3070 3080 3090 3100
REMSHHSGGK MYADDTAGWD TRITRADLDN EAKVLELMEG EHRQLARAII
3110 3120 3130 3140 3150
ELTYKHKVVK VMRPGTDGKT VMDVISREDQ RGSGQVVTYA LNTFTNIAVQ
3160 3170 3180 3190 3200
LIRLMEAEGV IGQEHLESLP RKTKYAVRTW LFENGEERVT RMAVSGDDCV
3210 3220 3230 3240 3250
VKPLDDRFAN ALHFLNSMSK VRKDVPEWKP SSGWHDWQQV PFCSNHFQEL
3260 3270 3280 3290 3300
IMKDGRTLVV PCRGQDELIG RARVSPGSGW NVRDTACLAK AYAQMWLLLY
3310 3320 3330 3340 3350
FHRRDLRLMA NAICSAVPSN WVPTGRTSWS VHATGEWMTT DDMLEVWNKV
3360 3370 3380 3390 3400
WIQDNEWMLD KTPVQSWTDI PYTGKREDIW CGSLIGTRTR ATWAENIYAA
3410 3420 3430
INQVRAIIGQ EKYRDYMLSL RRYEEVNVQE DRVL
Length:3,434
Mass (Da):380,313
Last modified:November 23, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF05864FD02780251
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AY453411 Genomic RNA Translation: AAS59402.1

NCBI Reference Sequences

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RefSeqi
YP_164264.1, NC_006551.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

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GeneIDi
5075863

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:5075863

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY453411 Genomic RNA Translation: AAS59402.1
RefSeqiYP_164264.1, NC_006551.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
6A0PX-ray2.00A294-699[»]
SMRiQ5WPU5
ModBaseiSearch...
PDBe-KBiSearch...

Genome annotation databases

GeneIDi5075863
KEGGivg:5075863

Family and domain databases

CDDicd12149, Flavi_E_C, 1 hit
Gene3Di1.10.10.930, 1 hit
1.10.8.970, 1 hit
1.20.1280.260, 1 hit
2.40.10.10, 1 hit
2.60.260.50, 1 hit
2.60.40.350, 1 hit
2.60.98.10, 1 hit
InterProiView protein in InterPro
IPR011492, DEAD_Flavivir
IPR043502, DNA/RNA_pol_sf
IPR000069, Env_glycoprot_M_flavivir
IPR038302, Env_glycoprot_M_sf_flavivir
IPR001122, Flavi_capsidC
IPR037172, Flavi_capsidC_sf
IPR027287, Flavi_E_Ig-like
IPR026470, Flavi_E_Stem/Anchor_dom
IPR038345, Flavi_E_Stem/Anchor_dom_sf
IPR001157, Flavi_NS1
IPR000752, Flavi_NS2A
IPR000487, Flavi_NS2B
IPR000404, Flavi_NS4A
IPR001528, Flavi_NS4B
IPR002535, Flavi_propep
IPR038688, Flavi_propep_sf
IPR000336, Flavivir/Alphavir_Ig-like_sf
IPR001850, Flavivirus_NS3_S7
IPR014412, Gen_Poly_FLV
IPR011998, Glycoprot_cen/dimer
IPR036253, Glycoprot_cen/dimer_sf
IPR038055, Glycoprot_E_dimer_dom
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR014756, Ig_E-set
IPR026490, mRNA_cap_0/1_MeTrfase
IPR027417, P-loop_NTPase
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR000208, RNA-dir_pol_flavivirus
IPR007094, RNA-dir_pol_PSvirus
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR029063, SAM-dependent_MTases
PfamiView protein in Pfam
PF01003, Flavi_capsid, 1 hit
PF07652, Flavi_DEAD, 1 hit
PF02832, Flavi_glycop_C, 1 hit
PF00869, Flavi_glycoprot, 1 hit
PF01004, Flavi_M, 1 hit
PF00948, Flavi_NS1, 1 hit
PF01005, Flavi_NS2A, 1 hit
PF01002, Flavi_NS2B, 1 hit
PF01350, Flavi_NS4A, 1 hit
PF01349, Flavi_NS4B, 1 hit
PF00972, Flavi_NS5, 1 hit
PF01570, Flavi_propep, 1 hit
PF01728, FtsJ, 1 hit
PF00949, Peptidase_S7, 1 hit
PIRSFiPIRSF003817, Gen_Poly_FLV, 1 hit
SMARTiView protein in SMART
SM00487, DEXDc, 1 hit
SM00490, HELICc, 1 hit
SUPFAMiSSF101257, SSF101257, 1 hit
SSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF53335, SSF53335, 1 hit
SSF56672, SSF56672, 1 hit
SSF56983, SSF56983, 1 hit
SSF81296, SSF81296, 1 hit
TIGRFAMsiTIGR04240, flavi_E_stem, 1 hit
PROSITEiView protein in PROSITE
PS51527, FLAVIVIRUS_NS2B, 1 hit
PS51528, FLAVIVIRUS_NS3PRO, 1 hit
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51591, RNA_CAP01_NS5_MT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOLG_USUV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5WPU5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2017
Last sequence update: November 23, 2004
Last modified: August 12, 2020
This is version 140 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
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