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UniProtKB - Q5VWX1 (KHDR2_HUMAN)

Entry version 161 (07 Apr 2021)
Sequence version 1 (07 Dec 2004)
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Protein

KH domain-containing, RNA-binding, signal transduction-associated protein 2

Gene

KHDRBS2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

RNA-binding protein that plays a role in the regulation of alternative splicing and influences mRNA splice site selection and exon inclusion. Binds both poly(A) and poly(U) homopolymers. Phosphorylation by PTK6 inhibits its RNA-binding ability (By similarity). Induces an increased concentration-dependent incorporation of exon in CD44 pre-mRNA by direct binding to purine-rich exonic enhancer. Can regulate alternative splicing of NRXN1 in the laminin G-like domain 6 containing the evolutionary conserved neurexin alternative spliced segment 4 (AS4) involved in neurexin selective targeting to postsynaptic partners. Regulates cell-type specific alternative splicing of NRXN1 at AS4 and acts synergystically with SAM68 in exon skipping. In contrast acts antagonistically with SAM68 in NRXN3 exon skipping at AS4. Its phosphorylation by FYN inhibits its ability to regulate splice site selection. May function as an adapter protein for Src kinases during mitosis.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding
Biological processmRNA processing, Transcription, Transcription regulation

Enzyme and pathway databases

Pathway Commons web resource for biological pathway data

More...PathwayCommonsi		Q5VWX1

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-HSA-8849468, PTK6 Regulates Proteins Involved in RNA Processing

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
KH domain-containing, RNA-binding, signal transduction-associated protein 2
Alternative name(s):
Sam68-like mammalian protein 1
Short name:
SLM-1
Short name:
hSLM-1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:KHDRBS2
Synonyms:SLM1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6

Organism-specific databases

Human Gene Nomenclature Database

More...HGNCi		HGNC:18114, KHDRBS2

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		610487, gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_Q5VWX1

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSG00000112232.8

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...DisGeNETi		202559

Open Targets

More...OpenTargetsi		ENSG00000112232

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA30093

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...Pharosi		Q5VWX1, Tbio

Genetic variation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		KHDRBS2

Domain mapping of disease mutations (DMDM)

More...DMDMi		74762274

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003089531 – 349KH domain-containing, RNA-binding, signal transduction-associated protein 2Add BLAST349

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei230Omega-N-methylarginineBy similarity1
Modified residuei240Omega-N-methylarginineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Methylated.1 Publication
Tyrosine phosphorylated by FYN, PTK6 and SRC. Tyrosine phosphorylated by SRC during mitosis (By similarity).By similarity

Keywords - PTMi

Methylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q5VWX1

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q5VWX1

MassIVE - Mass Spectrometry Interactive Virtual Environment

More...MassIVEi		Q5VWX1

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q5VWX1

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q5VWX1

PeptideAtlas

More...PeptideAtlasi		Q5VWX1

PRoteomics IDEntifications database

More...PRIDEi		Q5VWX1

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		65566

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q5VWX1

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q5VWX1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed in brain, lung, kidney and small intestine. Weakly expressed in placenta, liver, spleen, thymus, ovary and colon.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000112232, Expressed in cortical plate and 90 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q5VWX1, HS

Organism-specific databases

Human Protein Atlas

More...HPAi		ENSG00000112232, Tissue enhanced (brain, thyroid gland)

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Self-associates to form homooligomers (By similarity).

Interacts with KHDRBS1/SAM68; heterooligomer formation of KHDRBS family proteins may modulate RNA substrate specificity (By similarity).

Interacts with RBMX (PubMed:19282290).

Interacts with SAFB, SFRS9 and YTHDC1.

Interacts with FYN and PLCG1 (via SH3 domain).

Interacts (phosphorylated) with FYN, GRB2, PLCG1 and RASA1 (via SH2 domain) (By similarity).

By similarity1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details
Q5VWX1
With#Exp.IntAct
AEN [Q8WTP8]3EBI-742808,EBI-8637627
BAHD1 [Q8TBE0]3EBI-742808,EBI-742750
BMP7 [P18075]3EBI-742808,EBI-1035195
CATSPER1 [Q8NEC5]6EBI-742808,EBI-744545
CHTOP [Q9Y3Y2]3EBI-742808,EBI-347794
CHTOP - isoform 2 [Q9Y3Y2-3]3EBI-742808,EBI-11984237
CIRBP [Q14011]4EBI-742808,EBI-538850
CNNM3 [Q8NE01]3EBI-742808,EBI-741032
DALRD3 - isoform 2 [Q5D0E6-2]3EBI-742808,EBI-9090939
DOCK2 [Q92608]6EBI-742808,EBI-448771
FOXD4L3 [Q6VB84]3EBI-742808,EBI-11961494
HBZ [P02008]4EBI-742808,EBI-719843
HHEX [Q03014]3EBI-742808,EBI-747421
HNRNPK - isoform 2 [P61978-2]4EBI-742808,EBI-7060731
HNRNPR [O43390]3EBI-742808,EBI-713419
KHDRBS3 [O75525]4EBI-742808,EBI-722504
LMNTD2 [Q8IXW0]3EBI-742808,EBI-12028858
LNX1 [Q8TBB1]3EBI-742808,EBI-739832
MTA1 [Q13330]3EBI-742808,EBI-714236
NABP1 [Q96AH0]3EBI-742808,EBI-2889252
NPDC1 [Q9NQX5]6EBI-742808,EBI-748927
PRPF31 [Q8WWY3]8EBI-742808,EBI-1567797
PRR3 [P79522]6EBI-742808,EBI-2803328
PTK6 [Q13882]4EBI-742808,EBI-1383632
RBM10 [P98175]3EBI-742808,EBI-721525
RBM14 [Q96PK6]3EBI-742808,EBI-954272
RBM3 [P98179]8EBI-742808,EBI-2949699
RBMX [P38159]10EBI-742808,EBI-743526
RFC3 [P40938]3EBI-742808,EBI-1055010
SDCBP [O00560]6EBI-742808,EBI-727004
SPG7 [Q9UQ90]3EBI-742808,EBI-717201
SULT1A3 [P0DMM9]3EBI-742808,EBI-10196922
TYK2 [P29597]7EBI-742808,EBI-1383454
TYMSOS [Q8TAI1]3EBI-742808,EBI-742060
YTHDC1 [Q96MU7]6EBI-742808,EBI-2849854
ZFC3H1 [G3V1X1]3EBI-742808,EBI-6448783
ZNF497 [Q6ZNH5]3EBI-742808,EBI-10486136
ZNF581 [Q9P0T4]3EBI-742808,EBI-745520
ZNF688 [A0A0S2Z5X4]3EBI-742808,EBI-16429014
ZNF837 [Q96EG3]3EBI-742808,EBI-11962574

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		128436, 122 interactors

Protein interaction database and analysis system

More...IntActi		Q5VWX1, 72 interactors

Molecular INTeraction database

More...MINTi		Q5VWX1

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000281156

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q5VWX1, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q5VWX1

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini65 – 135KHPROSITE-ProRule annotationAdd BLAST71

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi211 – 262Pro-richAdd BLAST52

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the KHDRBS family.Curated

Keywords - Domaini

SH3-binding

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1588, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000157134

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_034976_0_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q5VWX1

Identification of Orthologs from Complete Genome Data

More...OMAi		EEWTTTR

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q5VWX1

TreeFam database of animal gene trees

More...TreeFami		TF314878

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.1370.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR004087, KH_dom
IPR004088, KH_dom_type_1
IPR036612, KH_dom_type_1_sf
IPR032571, Qua1_dom
IPR032335, Sam68-YY

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00013, KH_1, 1 hit
PF16274, Qua1, 1 hit
PF16568, Sam68-YY, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00322, KH, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF54791, SSF54791, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50084, KH_TYPE_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q5VWX1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEEKYLPEL MAEKDSLDPS FVHASRLLAE EIEKFQGSDG KKEDEEKKYL 
        60         70         80         90        100
DVISNKNIKL SERVLIPVKQ YPKFNFVGKL LGPRGNSLKR LQEETGAKMS 
       110        120        130        140        150
ILGKGSMRDK AKEEELRKSG EAKYAHLSDE LHVLIEVFAP PGEAYSRMSH 
       160        170        180        190        200
ALEEIKKFLV PDYNDEIRQE QLRELSYLNG SEDSGRGRGI RGRGIRIAPT 
       210        220        230        240        250
APSRGRGGAI PPPPPPGRGV LTPRGSTVTR GALPVPPVAR GVPTPRARGA 
       260        270        280        290        300
PTVPGYRAPP PPAHEAYEEY GYDDGYGGEY DDQTYETYDN SYATQTQSVP 
       310        320        330        340 
EYYDYGHGVS EDAYDSYAPE EWATTRSSLK APPQRSARGG YREHPYGRY
Length:349
Mass (Da):38,927
Last modified:December 7, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEF16E301D8A12164
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A6Q8PGH5A0A6Q8PGH5_HUMAN
KH domain-containing, RNA-binding, ...
KHDRBS2
305Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti65L → P in AAL77219 (PubMed:12549823).Curated1
Sequence conflicti232A → V in AAL77219 (PubMed:12549823).Curated1
Sequence conflicti326R → S in AAH34043 (PubMed:15489334).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_036885308G → A. Corresponds to variant dbSNP:rs7449840Ensembl.1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AY077838 mRNA Translation: AAL77219.1
AK292043 mRNA Translation: BAF84732.1
AL360220 Genomic DNA No translation available.
AL355347 Genomic DNA No translation available.
AL391644 Genomic DNA No translation available.
AL138882 Genomic DNA No translation available.
AL049544 Genomic DNA No translation available.
Z93021 Genomic DNA No translation available.
CH471143 Genomic DNA Translation: EAW88490.1
BC034043 mRNA Translation: AAH34043.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS4963.1

NCBI Reference Sequences

More...RefSeqi		NP_689901.2, NM_152688.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000281156; ENSP00000281156; ENSG00000112232

Database of genes from NCBI RefSeq genomes

More...GeneIDi		202559

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:202559

UCSC genome browser

More...UCSCi		uc003peg.3, human

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY077838 mRNA Translation: AAL77219.1
AK292043 mRNA Translation: BAF84732.1
AL360220 Genomic DNA No translation available.
AL355347 Genomic DNA No translation available.
AL391644 Genomic DNA No translation available.
AL138882 Genomic DNA No translation available.
AL049544 Genomic DNA No translation available.
Z93021 Genomic DNA No translation available.
CH471143 Genomic DNA Translation: EAW88490.1
BC034043 mRNA Translation: AAH34043.1
CCDSiCCDS4963.1
RefSeqiNP_689901.2, NM_152688.3

3D structure databases

SMRiQ5VWX1
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi128436, 122 interactors
IntActiQ5VWX1, 72 interactors
MINTiQ5VWX1
STRINGi9606.ENSP00000281156

PTM databases

iPTMnetiQ5VWX1
PhosphoSitePlusiQ5VWX1

Genetic variation databases

BioMutaiKHDRBS2
DMDMi74762274

Proteomic databases

EPDiQ5VWX1
jPOSTiQ5VWX1
MassIVEiQ5VWX1
MaxQBiQ5VWX1
PaxDbiQ5VWX1
PeptideAtlasiQ5VWX1
PRIDEiQ5VWX1
ProteomicsDBi65566

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		17553, 141 antibodies

The DNASU plasmid repository

More...DNASUi		202559

Genome annotation databases

EnsembliENST00000281156; ENSP00000281156; ENSG00000112232
GeneIDi202559
KEGGihsa:202559
UCSCiuc003peg.3, human

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		202559
DisGeNETi202559

GeneCards: human genes, protein and diseases

More...GeneCardsi		KHDRBS2
HGNCiHGNC:18114, KHDRBS2
HPAiENSG00000112232, Tissue enhanced (brain, thyroid gland)
MIMi610487, gene
neXtProtiNX_Q5VWX1
OpenTargetsiENSG00000112232
PharmGKBiPA30093
VEuPathDBiHostDB:ENSG00000112232.8

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiKOG1588, Eukaryota
GeneTreeiENSGT00940000157134
HOGENOMiCLU_034976_0_1_1
InParanoidiQ5VWX1
OMAiEEWTTTR
PhylomeDBiQ5VWX1
TreeFamiTF314878

Enzyme and pathway databases

PathwayCommonsiQ5VWX1
ReactomeiR-HSA-8849468, PTK6 Regulates Proteins Involved in RNA Processing

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		202559, 3 hits in 987 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		KHDRBS2, human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		202559
PharosiQ5VWX1, Tbio

Protein Ontology

More...PROi		PR:Q5VWX1
RNActiQ5VWX1, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000112232, Expressed in cortical plate and 90 other tissues
GenevisibleiQ5VWX1, HS

Family and domain databases

Gene3Di3.30.1370.10, 1 hit
InterProiView protein in InterPro
IPR004087, KH_dom
IPR004088, KH_dom_type_1
IPR036612, KH_dom_type_1_sf
IPR032571, Qua1_dom
IPR032335, Sam68-YY
PfamiView protein in Pfam
PF00013, KH_1, 1 hit
PF16274, Qua1, 1 hit
PF16568, Sam68-YY, 1 hit
SMARTiView protein in SMART
SM00322, KH, 1 hit
SUPFAMiSSF54791, SSF54791, 1 hit
PROSITEiView protein in PROSITE
PS50084, KH_TYPE_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiKHDR2_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5VWX1
Secondary accession number(s): A8K7M8, Q8N4I4, Q8TCZ4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: December 7, 2004
Last modified: April 7, 2021
This is version 161 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with genetic variants
    List of human entries with genetic variants
  3. Human variants curated from literature reports
    Index of human variants curated from literature reports
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families
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