UniProtKB - Q5VW22 (AGAP6_HUMAN)
Protein
Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6
Gene
AGAP6
Organism
Homo sapiens (Human)
Status
Functioni
Putative GTPase-activating protein.Curated
Miscellaneous
Encoded by one of the numerous copies of centaurin gamma-like genes clustered in the q11 region of chromosome 10.
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 456 – 479 | C4-typePROSITE-ProRule annotationAdd BLAST | 24 |
GO - Molecular functioni
- GTPase activator activity Source: UniProtKB-KW
- metal ion binding Source: UniProtKB-KW
Keywordsi
Molecular function | GTPase activation |
Ligand | Metal-binding, Zinc |
Enzyme and pathway databases
PathwayCommonsi | Q5VW22 |
Names & Taxonomyi
Protein namesi | Recommended name: Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6Short name: AGAP-6 Alternative name(s): Centaurin-gamma-like family member 3 |
Gene namesi | Name:AGAP6 Synonyms:CTGLF3 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
EuPathDBi | HostDB:ENSG00000204149.9 |
HGNCi | HGNC:23466, AGAP6 |
neXtProti | NX_Q5VW22 |
Subcellular locationi
Nucleus
- nucleus Source: GO_Central
Pathology & Biotechi
Miscellaneous databases
Pharosi | Q5VW22, Tdark |
Polymorphism and mutation databases
BioMutai | AGAP6 |
DMDMi | 74756919 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000284674 | 1 – 663 | Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6Add BLAST | 663 |
Proteomic databases
jPOSTi | Q5VW22 |
MassIVEi | Q5VW22 |
PeptideAtlasi | Q5VW22 |
PRIDEi | Q5VW22 |
ProteomicsDBi | 65507 [Q5VW22-1] 65508 [Q5VW22-2] |
PTM databases
iPTMneti | Q5VW22 |
PhosphoSitePlusi | Q5VW22 |
Expressioni
Gene expression databases
Bgeei | ENSG00000204149, Expressed in left lobe of thyroid gland and 112 other tissues |
Genevisiblei | Q5VW22, HS |
Organism-specific databases
HPAi | ENSG00000204149, Low tissue specificity |
Interactioni
Protein-protein interaction databases
BioGRIDi | 135969, 1 interactor |
STRINGi | 9606.ENSP00000400972 |
Miscellaneous databases
RNActi | Q5VW22, protein |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 259 – 420 | PHPROSITE-ProRule annotationAdd BLAST | 162 | |
Domaini | 441 – 561 | Arf-GAPPROSITE-ProRule annotationAdd BLAST | 121 | |
Repeati | 600 – 629 | ANK 1Add BLAST | 30 | |
Repeati | 633 – 662 | ANK 2Add BLAST | 30 |
Sequence similaritiesi
Belongs to the centaurin gamma-like family.Curated
Zinc finger
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 456 – 479 | C4-typePROSITE-ProRule annotationAdd BLAST | 24 |
Keywords - Domaini
ANK repeat, Repeat, Zinc-fingerPhylogenomic databases
eggNOGi | KOG0705, Eukaryota |
GeneTreei | ENSGT00940000163475 |
InParanoidi | Q5VW22 |
OMAi | CEEVNET |
OrthoDBi | 751525at2759 |
PhylomeDBi | Q5VW22 |
TreeFami | TF317762 |
Family and domain databases
Gene3Di | 1.25.40.20, 1 hit 3.30.40.160, 1 hit |
InterProi | View protein in InterPro IPR002110, Ankyrin_rpt IPR020683, Ankyrin_rpt-contain_dom IPR036770, Ankyrin_rpt-contain_sf IPR037278, ARFGAP/RecO IPR001164, ArfGAP_dom IPR038508, ArfGAP_dom_sf IPR001849, PH_domain |
Pfami | View protein in Pfam PF12796, Ank_2, 1 hit PF01412, ArfGap, 1 hit |
PRINTSi | PR00405, REVINTRACTNG |
SMARTi | View protein in SMART SM00248, ANK, 2 hits SM00105, ArfGap, 1 hit SM00233, PH, 1 hit |
SUPFAMi | SSF48403, SSF48403, 1 hit SSF57863, SSF57863, 1 hit |
PROSITEi | View protein in PROSITE PS50297, ANK_REP_REGION, 1 hit PS50088, ANK_REPEAT, 1 hit PS50115, ARFGAP, 1 hit PS50003, PH_DOMAIN, 1 hit |
s (2)i Sequence
Sequence statusi: Complete.
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketIsoform 1 (identifier: Q5VW22-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MGNILTCRVH PSVSLEFDQQ QGSVCPSESE TYEAGARDRM AGAPMAAAVQ
60 70 80 90 100
PAEVTVEVGE DLHMHHVRDR EMPEALEFNP SANPEASTIF QRNSQTDVVE
110 120 130 140 150
IRRSNCTNHV SAVRFSQQYS LCSTIFLDDS TAIQHYLTMT IISVTLEIPH
160 170 180 190 200
HITQRDADRT LSIPDEQLHS FAVSTVHIMK KRNGGGSLNN YSSSIPSTPS
210 220 230 240 250
TSQEDPQFSV PPTANTPTPV CKRSMRWSNL FTSEKGSDPD KERKAPENHA
260 270 280 290 300
DTIGSGRAIP IKQGMLLKRS GKWLKTWKKK YVTLCSNGML TYYSSLGDYM
310 320 330 340 350
KNIHKKEIDL QTSTIKVPGK WPSLATSACT PISSSKSNGL SKDMDTGLGD
360 370 380 390 400
SICFSPSISS TTSPKLNPPP SPHANKKKHL KKKSTNNFMI VSATGQTWHF
410 420 430 440 450
EATTYEERDA WVQAIQSQIL ASLQSCESSK SKSQLTSQSE AMALQSIQNM
460 470 480 490 500
RGNAHCVDCE TQNPKWASLN LGVLMCIECS GIHRSLGPHL SRVRSLELDD
510 520 530 540 550
WPVELRKVMS SIVNDLANSI WEGSSQGQTK PSEKSTREEK ERWIRSKYEE
560 570 580 590 600
KLFLAPLPCT ELSLGQQLLR ATADEDLQTA ILLLAHGSCE EVNETCGEGD
610 620 630 640 650
GCTALHLACR KGNVVLAQLL IWYGVDVMAR DAHGNTALTY ARQASSQECI
660
NVLLQYGCPD ECV
Note: Prediction based on family homologs sequence.
Sequence cautioni
The sequence BC131545 differs from that shown. Reason: Frameshift.Curated
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 37 | R → G in BC131545 (PubMed:15489334).Curated | 1 | |
Sequence conflicti | 70 | R → Q in BC131545 (PubMed:15489334).Curated | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_040815 | 73 | P → PEALEFNLSANPESSTIFQR NSQT in isoform 2. 1 Publication | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL442003 Genomic DNA No translation available. BC131545 mRNA No translation available. |
CCDSi | CCDS44397.1 [Q5VW22-2] |
RefSeqi | NP_001071133.2, NM_001077665.2 [Q5VW22-2] XP_016871759.1, XM_017016270.1 |
Genome annotation databases
Ensembli | ENST00000374056; ENSP00000363168; ENSG00000204149 [Q5VW22-1] ENST00000412531; ENSP00000500374; ENSG00000204149 [Q5VW22-2] |
GeneIDi | 414189 |
KEGGi | hsa:414189 |
UCSCi | uc001jix.5, human [Q5VW22-1] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL442003 Genomic DNA No translation available. BC131545 mRNA No translation available. |
CCDSi | CCDS44397.1 [Q5VW22-2] |
RefSeqi | NP_001071133.2, NM_001077665.2 [Q5VW22-2] XP_016871759.1, XM_017016270.1 |
3D structure databases
SMRi | Q5VW22 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 135969, 1 interactor |
STRINGi | 9606.ENSP00000400972 |
PTM databases
iPTMneti | Q5VW22 |
PhosphoSitePlusi | Q5VW22 |
Polymorphism and mutation databases
BioMutai | AGAP6 |
DMDMi | 74756919 |
Proteomic databases
jPOSTi | Q5VW22 |
MassIVEi | Q5VW22 |
PeptideAtlasi | Q5VW22 |
PRIDEi | Q5VW22 |
ProteomicsDBi | 65507 [Q5VW22-1] 65508 [Q5VW22-2] |
Genome annotation databases
Ensembli | ENST00000374056; ENSP00000363168; ENSG00000204149 [Q5VW22-1] ENST00000412531; ENSP00000500374; ENSG00000204149 [Q5VW22-2] |
GeneIDi | 414189 |
KEGGi | hsa:414189 |
UCSCi | uc001jix.5, human [Q5VW22-1] |
Organism-specific databases
CTDi | 414189 |
EuPathDBi | HostDB:ENSG00000204149.9 |
GeneCardsi | AGAP6 |
HGNCi | HGNC:23466, AGAP6 |
HPAi | ENSG00000204149, Low tissue specificity |
neXtProti | NX_Q5VW22 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG0705, Eukaryota |
GeneTreei | ENSGT00940000163475 |
InParanoidi | Q5VW22 |
OMAi | CEEVNET |
OrthoDBi | 751525at2759 |
PhylomeDBi | Q5VW22 |
TreeFami | TF317762 |
Enzyme and pathway databases
PathwayCommonsi | Q5VW22 |
Miscellaneous databases
BioGRID-ORCSi | 414189, 465 hits in 819 CRISPR screens |
ChiTaRSi | AGAP6, human |
GenomeRNAii | 414189 |
Pharosi | Q5VW22, Tdark |
PROi | PR:Q5VW22 |
RNActi | Q5VW22, protein |
Gene expression databases
Bgeei | ENSG00000204149, Expressed in left lobe of thyroid gland and 112 other tissues |
Genevisiblei | Q5VW22, HS |
Family and domain databases
Gene3Di | 1.25.40.20, 1 hit 3.30.40.160, 1 hit |
InterProi | View protein in InterPro IPR002110, Ankyrin_rpt IPR020683, Ankyrin_rpt-contain_dom IPR036770, Ankyrin_rpt-contain_sf IPR037278, ARFGAP/RecO IPR001164, ArfGAP_dom IPR038508, ArfGAP_dom_sf IPR001849, PH_domain |
Pfami | View protein in Pfam PF12796, Ank_2, 1 hit PF01412, ArfGap, 1 hit |
PRINTSi | PR00405, REVINTRACTNG |
SMARTi | View protein in SMART SM00248, ANK, 2 hits SM00105, ArfGap, 1 hit SM00233, PH, 1 hit |
SUPFAMi | SSF48403, SSF48403, 1 hit SSF57863, SSF57863, 1 hit |
PROSITEi | View protein in PROSITE PS50297, ANK_REP_REGION, 1 hit PS50088, ANK_REPEAT, 1 hit PS50115, ARFGAP, 1 hit PS50003, PH_DOMAIN, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | AGAP6_HUMAN | |
Accessioni | Q5VW22Primary (citable) accession number: Q5VW22 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | April 17, 2007 |
Last sequence update: | December 7, 2004 | |
Last modified: | December 2, 2020 | |
This is version 138 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families - Human chromosome 10
Human chromosome 10: entries, gene names and cross-references to MIM