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Protein

Protein FAM78B

Gene

FAM78B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM78B
Gene namesi
Name:FAM78B
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

EuPathDBiHostDB:ENSG00000188859.6
HGNCiHGNC:13495 FAM78B
neXtProtiNX_Q5VT40

Pathology & Biotechi

Organism-specific databases

DisGeNETi149297
OpenTargetsiENSG00000188859
PharmGKBiPA142671841

Polymorphism and mutation databases

BioMutaiFAM78B
DMDMi74746881

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002651141 – 261Protein FAM78BAdd BLAST261

Proteomic databases

MaxQBiQ5VT40
PaxDbiQ5VT40
PeptideAtlasiQ5VT40
PRIDEiQ5VT40
ProteomicsDBi65301

Expressioni

Gene expression databases

BgeeiENSG00000188859
CleanExiHS_FAM78B
ExpressionAtlasiQ5VT40 baseline and differential
GenevisibleiQ5VT40 HS

Organism-specific databases

HPAiHPA052789
HPA073246

Interactioni

Protein-protein interaction databases

BioGridi127202, 5 interactors

Structurei

3D structure databases

ProteinModelPortaliQ5VT40
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM78 family.Curated

Phylogenomic databases

eggNOGiENOG410IGXQ Eukaryota
ENOG410YZF1 LUCA
GeneTreeiENSGT00390000018059
HOGENOMiHOG000231929
HOVERGENiHBG054717
InParanoidiQ5VT40
OMAiRWRMRVD
OrthoDBiEOG091G0DFT
PhylomeDBiQ5VT40
TreeFamiTF329533

Family and domain databases

InterProiView protein in InterPro
IPR029638 FAM78
IPR029639 FAM78B
PANTHERiPTHR31655 PTHR31655, 1 hit
PTHR31655:SF0 PTHR31655:SF0, 1 hit

Sequencei

Sequence statusi: Complete.

Q5VT40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCIQSITCK ARIRRENIVV YDVCATIDQC PTRIEETSPI VLRYKTPYFK
60 70 80 90 100
ASARVVMPPI PRHETWVVGW IQACNQMEFF NTYSDLGMSS WELPDLREGR
110 120 130 140 150
VKAISDSDGV SYPWYGNTTE TVTLVGPTNK ISRFSVSMND NFYPSVTWAV
160 170 180 190 200
PVSDSNVPLL TRIKRDQSFT TWLVAMNTTT KEKIILQTIK WRMRVDIEVD
210 220 230 240 250
PLQLLGQRAR LVGRTQQEQP RILSRMEPIP PNALVKPNAN DAQVLMWRPK
260
RGPPLVVIPP K
Length:261
Mass (Da):29,835
Last modified:December 7, 2004 - v1
Checksum:iC22AA46C66136565
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK299946 mRNA Translation: BAH13179.1
AL626787 Genomic DNA No translation available.
AL596087 Genomic DNA No translation available.
CH471067 Genomic DNA Translation: EAW90771.1
BC114214 mRNA Translation: AAI14215.1
CCDSiCCDS30931.1
RefSeqiNP_001017961.1, NM_001017961.4
XP_016855906.1, XM_017000417.1
XP_016855907.1, XM_017000418.1
UniGeneiHs.133029
Hs.22930
Hs.555099

Genome annotation databases

EnsembliENST00000338353; ENSP00000339681; ENSG00000188859
ENST00000354422; ENSP00000346404; ENSG00000188859
ENST00000456900; ENSP00000389945; ENSG00000188859
GeneIDi149297
KEGGihsa:149297
UCSCiuc021pef.2 human

Similar proteinsi

Entry informationi

Entry nameiFA78B_HUMAN
AccessioniPrimary (citable) accession number: Q5VT40
Secondary accession number(s): B7Z693
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: December 7, 2004
Last modified: June 20, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

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