UniProtKB - Q5U1W8 (Q5U1W8_RAT)
Protein
Submitted name:
High-mobility group nucleosome binding domain 1
Gene
LOC100911295
Organism
Rattus norvegicus (Rat)
Status
Functioni
GO - Molecular functioni
- chromatin binding Source: RGD
- nucleosomal DNA binding Source: InterPro
GO - Biological processi
- chromatin organization Source: RGD
- positive regulation of NAD+ ADP-ribosyltransferase activity Source: RGD
- post-embryonic camera-type eye morphogenesis Source: RGD
- pyrimidine dimer repair by nucleotide-excision repair Source: RGD
- regulation of development, heterochronic Source: RGD
- regulation of epithelial cell proliferation Source: RGD
- regulation of transcription by RNA polymerase II Source: RGD
- response to UV-B Source: RGD
- response to UV-C Source: RGD
- transcription-coupled nucleotide-excision repair Source: RGD
Enzyme and pathway databases
Reactomei | R-RNO-6781823, Formation of TC-NER Pre-Incision Complex R-RNO-6782135, Dual incision in TC-NER R-RNO-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER |
Names & Taxonomyi
Protein namesi | Submitted name: High-mobility group nucleosome binding domain 1ImportedSubmitted name: Non-histone chromosomal protein HMG-14-likeImported |
Gene namesi | |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1307761, Hmgn1 6494054, LOC100911295 |
Subcellular locationi
Expressioni
Gene expression databases
Bgeei | ENSRNOG00000048226, Expressed in female gonad and 20 other tissues |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 96 | DisorderedSequence analysisAdd BLAST | 96 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 22 | PolyampholyteSequence analysisAdd BLAST | 22 | |
Compositional biasi | 31 – 62 | PolyampholyteSequence analysisAdd BLAST | 32 | |
Compositional biasi | 64 – 82 | PolarSequence analysisAdd BLAST | 19 |
Sequence similaritiesi
Belongs to the HMGN family.ARBA annotation
Phylogenomic databases
eggNOGi | ENOG502S7UM, Eukaryota |
GeneTreei | ENSGT00950000182802 |
HOGENOMi | CLU_141985_1_0_1 |
OMAi | XEAPEEP |
OrthoDBi | 1636546at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR000079, HMGN_fam |
Pfami | View protein in Pfam PF01101, HMG14_17, 1 hit |
PRINTSi | PR00925, NONHISHMG17 |
SMARTi | View protein in SMART SM00527, HMG17, 1 hit |
PROSITEi | View protein in PROSITE PS00355, HMG14_17, 1 hit |
i Sequence
Sequence statusi: Complete.
Q5U1W8-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MPKRKVSADG AAKAEPKRRS ARLSAKPAPA KVDAKPKKAA GKDKASDKKA
60 70 80 90
QIKGKRGAKG KQAEVADQQT TDLPAENGET ENQSPASEEE KEAKSD
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07033819 Genomic DNA No translation available. AC142178 Genomic DNA No translation available. BC086423 mRNA Translation: AAH86423.1 |
RefSeqi | NP_001013202.1, NM_001013184.1 XP_003751077.1, XM_003751029.4 |
Genome annotation databases
Ensembli | ENSRNOT00000075126; ENSRNOP00000065878; ENSRNOG00000048226 ENSRNOT00000075762; ENSRNOP00000067432; ENSRNOG00000050978 |
GeneIDi | 100911295 360704 |
KEGGi | rno:100911295 rno:360704 |
UCSCi | RGD:1307761, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07033819 Genomic DNA No translation available. AC142178 Genomic DNA No translation available. BC086423 mRNA Translation: AAH86423.1 |
RefSeqi | NP_001013202.1, NM_001013184.1 XP_003751077.1, XM_003751029.4 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000067432 |
Proteomic databases
PRIDEi | Q5U1W8 |
Genome annotation databases
Ensembli | ENSRNOT00000075126; ENSRNOP00000065878; ENSRNOG00000048226 ENSRNOT00000075762; ENSRNOP00000067432; ENSRNOG00000050978 |
GeneIDi | 100911295 360704 |
KEGGi | rno:100911295 rno:360704 |
UCSCi | RGD:1307761, rat |
Organism-specific databases
CTDi | 3150 |
RGDi | 1307761, Hmgn1 6494054, LOC100911295 |
Phylogenomic databases
eggNOGi | ENOG502S7UM, Eukaryota |
GeneTreei | ENSGT00950000182802 |
HOGENOMi | CLU_141985_1_0_1 |
OMAi | XEAPEEP |
OrthoDBi | 1636546at2759 |
Enzyme and pathway databases
Reactomei | R-RNO-6781823, Formation of TC-NER Pre-Incision Complex R-RNO-6782135, Dual incision in TC-NER R-RNO-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER |
Gene expression databases
Bgeei | ENSRNOG00000048226, Expressed in female gonad and 20 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR000079, HMGN_fam |
Pfami | View protein in Pfam PF01101, HMG14_17, 1 hit |
PRINTSi | PR00925, NONHISHMG17 |
SMARTi | View protein in SMART SM00527, HMG17, 1 hit |
PROSITEi | View protein in PROSITE PS00355, HMG14_17, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q5U1W8_RAT | |
Accessioni | Q5U1W8Primary (citable) accession number: Q5U1W8 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | December 7, 2004 |
Last sequence update: | December 7, 2004 | |
Last modified: | February 10, 2021 | |
This is version 106 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |