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UniProtKB - Q5SWD9 (TSR1_MOUSE)

Entry version 104 (25 May 2022)
Sequence version 1 (21 Dec 2004)
Previous versions | rss
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Protein

Pre-rRNA-processing protein TSR1 homolog

Gene

Tsr1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required during maturation of the 40S ribosomal subunit in the nucleolus.

By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processRibosome biogenesis

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-MMU-6791226, Major pathway of rRNA processing in the nucleolus and cytosol

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pre-rRNA-processing protein TSR1 homolog
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Tsr1
Synonyms:Kiaa1401
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:2144566, Tsr1

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSMUSG00000038335

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003112751 – 803Pre-rRNA-processing protein TSR1 homologAdd BLAST803

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q5SWD9

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q5SWD9

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q5SWD9

PeptideAtlas

More...PeptideAtlasi		Q5SWD9

PRoteomics IDEntifications database

More...PRIDEi		Q5SWD9

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		300139 [Q5SWD9-1]
300140 [Q5SWD9-2]
300141 [Q5SWD9-3]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q5SWD9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q5SWD9

SwissPalm database of S-palmitoylation events

More...SwissPalmi		Q5SWD9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000038335, Expressed in primitive streak and 308 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q5SWD9, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q5SWD9, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		222666, 4 interactors

Protein interaction database and analysis system

More...IntActi		Q5SWD9, 1 interactor

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000039027

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q5SWD9, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

AlphaFold Protein Structure Database

More...AlphaFoldDBi		Q5SWD9

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q5SWD9

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini81 – 242Bms1-type GPROSITE-ProRule annotationAdd BLAST162

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 83DisorderedSequence analysisAdd BLAST83
Regioni428 – 447DisorderedSequence analysisAdd BLAST20

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi62 – 78Basic and acidic residuesSequence analysisAdd BLAST17
Compositional biasi432 – 446Acidic residuesSequence analysisAdd BLAST15

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Bms1-like GTPase family. TSR1 subfamily.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1980, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000153195

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_009858_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q5SWD9

Identification of Orthologs from Complete Genome Data

More...OMAi		KTPHQQV

Database of Orthologous Groups

More...OrthoDBi		186926at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q5SWD9

TreeFam database of animal gene trees

More...TreeFami		TF105717

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR012948, AARP2CN
IPR039761, Bms1/Tsr1
IPR007034, BMS1_TSR1_C
IPR030387, G_Bms1/Tsr1_dom

The PANTHER Classification System

More...PANTHERi		PTHR12858, PTHR12858, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF08142, AARP2CN, 1 hit
PF04950, RIBIOP_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00785, AARP2CN, 1 hit
SM01362, DUF663, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51714, G_BMS1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q5SWD9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <p><strong>What is the canonical sequence?</strong><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MAAHRSGPLK QQNKAHKGGR HHGGGSAQRD SKGRVGPKIL CKKLKRQLSR 
        60         70         80         90        100
IDQRHRASQL RKQKRESVLA EKRQLGSKDG PPHQVLVVPL HSRISLPEAF 
       110        120        130        140        150
KLLQNEDLGT VYLSERGSTQ SFMLLCPSLK HRWFFTYARP GDLHTLLDMA 
       160        170        180        190        200
KVADTILFLL DPLEGWDSTG DYCLSCLFAQ GLPTYTLAVQ GLSGFPPKKQ 
       210        220        230        240        250
IDARKKLSKM VEKRFPEDKL LLLDTQQESG MLLRQLANQK QRHLAFRDRR 
       260        270        280        290        300
AYLFAHVADF VPSEESDLVG TLKISGYVRG RTLNVNSLLH IVGHGDFQMN 
       310        320        330        340        350
QIDAPVDPFP LNPRVIKSQK KPNMAMEVCV TDAAPDMEED LKVLMKADPD 
       360        370        380        390        400
HQESLQTEAI PDPMEGEQTW PTEEELDEAD DLLKQRSRVV KKVPKGTSSY 
       410        420        430        440        450
QAEWILDEGD ESDGEGGEYD DIQHEGFMEE ESQDGSGEEE EEECETMTLG 
       460        470        480        490        500
ESVRDDLYDE KVDAEDEERM LEKYKQERLE EMFPDEMDTP RDVAARIRFQ 
       510        520        530        540        550
KYRGLKSFRT SPWDPKENLP RDYARIFQFQ NFVNTRKRIF KEIEEKEAEG 
       560        570        580        590        600
AEVGWYVTLH VSDVPVSVVE YFRQGAPLIA FSLLPYEQKM SVLNMVVSRN 
       610        620        630        640        650
PGNTEPVKAK EELIFHCGFR RFRASPLFSQ HTAADKHKFQ RFLTADAAFV 
       660        670        680        690        700
VTVFAPITFP PASVLLFKQR RNGMHSLIAT GHLFSVDPDR MVIKRVVLSG 
       710        720        730        740        750
HPFKIFTKMA VVRYMFFNRE DVMWFKPVEL RTKWGRRGHI KEPLGTHGHM 
       760        770        780        790        800
KCSFDGKLKS QDTVLMNLYK RVFPKWTYDP YVPEPVPWVK SDISSTVSEV 

DME
Length:803
Mass (Da):92,105
Last modified:December 21, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0F0D07FD08E96C0A
GO
Isoform 2 (identifier: Q5SWD9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-122: Missing.

Show »
Length:681
Mass (Da):78,482
Checksum:i380C2E0FBD2207AA
GO
Isoform 3 (identifier: Q5SWD9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     381-382: DL → GQ
     383-803: Missing.

Show »
Length:382
Mass (Da):43,018
Checksum:i6E569B843035BA42
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
D6RCZ2D6RCZ2_MOUSE
Pre-rRNA-processing protein TSR1 ho...
Tsr1
90Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D6RI76D6RI76_MOUSE
Pre-rRNA-processing protein TSR1 ho...
Tsr1
65Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6ZVN6F6ZVN6_MOUSE
Pre-rRNA-processing protein TSR1 ho...
Tsr1
40Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH31531 differs from that shown. Reason: Frameshift.Curated
The sequence AAH31531 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti210M → T in AAH31531 (PubMed:15489334).Curated1
Sequence conflicti335P → A in AAH31531 (PubMed:15489334).Curated1
Sequence conflicti438E → K in BAE37023 (PubMed:16141072).Curated1
Sequence conflicti464A → E in AAH31531 (PubMed:15489334).Curated1
Sequence conflicti649F → L in AAH31531 (PubMed:15489334).Curated1
Sequence conflicti707T → N in BAE32349 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0295041 – 122Missing in isoform 2. 1 PublicationAdd BLAST122
Alternative sequenceiVSP_029505381 – 382DL → GQ in isoform 3. 1 Publication2
Alternative sequenceiVSP_029506383 – 803Missing in isoform 3. 1 PublicationAdd BLAST421

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK030545 mRNA Translation: BAE20453.1
AK134365 mRNA Translation: BAE22117.1
AK154063 mRNA Translation: BAE32349.1
AK162686 mRNA Translation: BAE37023.1
AK165662 mRNA Translation: BAE38324.1
AL604066 Genomic DNA No translation available.
BC031531 mRNA Translation: AAH31531.1 Sequence problems.
AK129350 mRNA Translation: BAC98160.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS36225.1 [Q5SWD9-1]

NCBI Reference Sequences

More...RefSeqi		NP_796299.2, NM_177325.3 [Q5SWD9-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000045807; ENSMUSP00000039027; ENSMUSG00000038335 [Q5SWD9-1]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		104662

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:104662

UCSC genome browser

More...UCSCi		uc007kcm.1, mouse [Q5SWD9-3]
uc007kcn.1, mouse [Q5SWD9-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK030545 mRNA Translation: BAE20453.1
AK134365 mRNA Translation: BAE22117.1
AK154063 mRNA Translation: BAE32349.1
AK162686 mRNA Translation: BAE37023.1
AK165662 mRNA Translation: BAE38324.1
AL604066 Genomic DNA No translation available.
BC031531 mRNA Translation: AAH31531.1 Sequence problems.
AK129350 mRNA Translation: BAC98160.1
CCDSiCCDS36225.1 [Q5SWD9-1]
RefSeqiNP_796299.2, NM_177325.3 [Q5SWD9-1]

3D structure databases

AlphaFoldDBiQ5SWD9
SMRiQ5SWD9
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi222666, 4 interactors
IntActiQ5SWD9, 1 interactor
STRINGi10090.ENSMUSP00000039027

PTM databases

iPTMnetiQ5SWD9
PhosphoSitePlusiQ5SWD9
SwissPalmiQ5SWD9

Proteomic databases

EPDiQ5SWD9
MaxQBiQ5SWD9
PaxDbiQ5SWD9
PeptideAtlasiQ5SWD9
PRIDEiQ5SWD9
ProteomicsDBi300139 [Q5SWD9-1]
300140 [Q5SWD9-2]
300141 [Q5SWD9-3]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		10721, 108 antibodies from 23 providers

Genome annotation databases

EnsembliENSMUST00000045807; ENSMUSP00000039027; ENSMUSG00000038335 [Q5SWD9-1]
GeneIDi104662
KEGGimmu:104662
UCSCiuc007kcm.1, mouse [Q5SWD9-3]
uc007kcn.1, mouse [Q5SWD9-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		55720
MGIiMGI:2144566, Tsr1
VEuPathDBiHostDB:ENSMUSG00000038335

Rodent Unidentified Gene-Encoded large proteins database

More...Rougei		Search...

Phylogenomic databases

eggNOGiKOG1980, Eukaryota
GeneTreeiENSGT00940000153195
HOGENOMiCLU_009858_1_0_1
InParanoidiQ5SWD9
OMAiKTPHQQV
OrthoDBi186926at2759
PhylomeDBiQ5SWD9
TreeFamiTF105717

Enzyme and pathway databases

ReactomeiR-MMU-6791226, Major pathway of rRNA processing in the nucleolus and cytosol

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		104662, 24 hits in 75 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Tsr1, mouse

Protein Ontology

More...PROi		PR:Q5SWD9
RNActiQ5SWD9, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000038335, Expressed in primitive streak and 308 other tissues
ExpressionAtlasiQ5SWD9, baseline and differential
GenevisibleiQ5SWD9, MM

Family and domain databases

InterProiView protein in InterPro
IPR012948, AARP2CN
IPR039761, Bms1/Tsr1
IPR007034, BMS1_TSR1_C
IPR030387, G_Bms1/Tsr1_dom
PANTHERiPTHR12858, PTHR12858, 1 hit
PfamiView protein in Pfam
PF08142, AARP2CN, 1 hit
PF04950, RIBIOP_C, 1 hit
SMARTiView protein in SMART
SM00785, AARP2CN, 1 hit
SM01362, DUF663, 1 hit
PROSITEiView protein in PROSITE
PS51714, G_BMS1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTSR1_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5SWD9
Secondary accession number(s): Q3TMW6
, Q3TRK6, Q3U4T2, Q3UYU4, Q3V3X8, Q6ZPR9, Q8K2F5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: December 21, 2004
Last modified: May 25, 2022
This is version 104 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families
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