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Protein

50S ribosomal protein L9

Gene

rplI

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA. Extends more that 50 Angstroms beyond the surface of the 70S ribosome.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-250-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L9
Gene namesi
Name:rplI
Ordered Locus Names:TTHA0242
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001766961 – 14850S ribosomal protein L9Add BLAST148

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0242

Structurei

Secondary structure

1148
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 7Combined sources6
Beta strandi10 – 12Combined sources3
Beta strandi18 – 20Combined sources3
Helixi23 – 28Combined sources6
Helixi30 – 33Combined sources4
Beta strandi35 – 38Combined sources4
Helixi41 – 57Combined sources17
Helixi60 – 72Combined sources13
Beta strandi87 – 90Combined sources4
Helixi94 – 104Combined sources11
Beta strandi111 – 114Combined sources4
Beta strandi124 – 126Combined sources3
Beta strandi132 – 134Combined sources3
Beta strandi139 – 142Combined sources4

3D structure databases

ProteinModelPortaliQ5SLQ1
SMRiQ5SLQ1
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SLQ1

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105K9Q Bacteria
COG0359 LUCA
HOGENOMiHOG000040337
KOiK02939
OMAiYLIPQGF
PhylomeDBiQ5SLQ1

Family and domain databases

Gene3Di3.10.430.100, 1 hit
3.40.5.10, 1 hit
HAMAPiMF_00503 Ribosomal_L9, 1 hit
InterProiView protein in InterPro
IPR000244 Ribosomal_L9
IPR009027 Ribosomal_L9/RNase_H1_N
IPR020594 Ribosomal_L9_bac/chp
IPR020069 Ribosomal_L9_C
IPR036791 Ribosomal_L9_C_sf
IPR020070 Ribosomal_L9_N
IPR036935 Ribosomal_L9_N_sf
PANTHERiPTHR21368 PTHR21368, 1 hit
PfamiView protein in Pfam
PF03948 Ribosomal_L9_C, 1 hit
PF01281 Ribosomal_L9_N, 1 hit
SUPFAMiSSF55653 SSF55653, 1 hit
SSF55658 SSF55658, 1 hit
TIGRFAMsiTIGR00158 L9, 1 hit
PROSITEiView protein in PROSITE
PS00651 RIBOSOMAL_L9, 1 hit

Sequencei

Sequence statusi: Complete.

Q5SLQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR
60 70 80 90 100
IRAQAKRLAE RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA
110 120 130 140
LSRQHGVTID PKRLALEKPI KELGEYVLTY KPHPEVPIQL KVSVVAQE
Length:148
Mass (Da):16,397
Last modified:December 21, 2004 - v1
Checksum:iB807DB9453506A2F
GO

Mass spectrometryi

Molecular mass is 16397 Da from positions 1 - 148. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD70065.1
RefSeqiWP_011227802.1, NC_006461.1
YP_143508.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD70065; BAD70065; BAD70065
GeneIDi3168676
KEGGittj:TTHA0242
PATRICifig|300852.9.peg.242

Similar proteinsi

Entry informationi

Entry nameiRL9_THET8
AccessioniPrimary (citable) accession number: Q5SLQ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: June 20, 2018
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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