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UniProtKB - Q5SHR2 (RL36_THET8)

Entry version 118 (18 Sep 2019)
Sequence version 1 (21 Dec 2004)
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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi11ZincBy similarity1
Metal bindingi14ZincBy similarity1
Metal bindingi27ZincBy similarity1
Metal bindingi32ZincBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		TTHE300852:G1GKC-1674-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpmJ
Ordered Locus Names:TTHA1668
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri300852 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000532 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001262841 – 3750S ribosomal protein L36Add BLAST37

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		300852.55773050

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

137
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q5SHR2

Database of comparative protein structure models

More...ModBasei		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		Q5SHR2

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL36 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG41067V7 Bacteria
COG0257 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000111584

KEGG Orthology (KO)

More...KOi		K02919

Family and domain databases

HAMAP database of protein families

More...HAMAPi		MF_00251 Ribosomal_L36, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR000473 Ribosomal_L36
IPR035977 Ribosomal_L36_sp

The PANTHER Classification System

More...PANTHERi		PTHR42888 PTHR42888, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00444 Ribosomal_L36, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF57840 SSF57840, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01022 rpmJ_bact, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00828 RIBOSOMAL_L36, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q5SHR2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30 
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG
Length:37
Mass (Da):4,421
Last modified:December 21, 2004 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i439072E1737E2AE8
GO

<p>This subsection of the ‘Sequence’ section reports information derived from mass spectrometry experiments done on the entire protein or on biologically active derived peptide(s).<p><a href='/help/mass_spectrometry' target='_top'>More...</a></p>Mass spectrometryi

Molecular mass is 4422 Da from positions 1 - 37. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AB024328 Genomic DNA Translation: BAA75545.1
AP008226 Genomic DNA Translation: BAD71491.1

NCBI Reference Sequences

More...RefSeqi		WP_008633370.1, NC_006461.1
YP_144934.1, NC_006461.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		BAD71491; BAD71491; BAD71491

Database of genes from NCBI RefSeq genomes

More...GeneIDi		3167970

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ttj:TTHA1668

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|300852.9.peg.1638

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA Translation: BAA75545.1
AP008226 Genomic DNA Translation: BAD71491.1
RefSeqiWP_008633370.1, NC_006461.1
YP_144934.1, NC_006461.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VY4X-ray2.60B9/D91-37[»]
1VY5X-ray2.55B9/D91-37[»]
1VY6X-ray2.90B9/D91-37[»]
1VY7X-ray2.80B9/D91-37[»]
4P6FX-ray3.60R9/Y91-37[»]
4P70X-ray3.68R9/Y91-37[»]
4TUAX-ray3.60R9/Y91-37[»]
4TUBX-ray3.60R9/Y91-37[»]
4TUCX-ray3.60R9/Y91-37[»]
4TUDX-ray3.60R9/Y91-37[»]
4TUEX-ray3.50R9/Y91-37[»]
4V4PX-ray5.50911-36[»]
4V4XX-ray5.00B81-37[»]
4V4YX-ray5.50B81-37[»]
4V4ZX-ray4.51B81-37[»]
4V51X-ray2.8091-37[»]
4V5CX-ray3.30B9/D91-37[»]
4V5DX-ray3.50B9/D91-37[»]
4V5EX-ray3.45B9/D91-37[»]
4V5FX-ray3.60B9/D91-37[»]
4V5GX-ray3.60B9/D91-37[»]
4V5JX-ray3.10B9/D91-37[»]
4V5KX-ray3.20B9/D91-37[»]
4V5LX-ray3.10B91-37[»]
4V5Melectron microscopy7.80B91-37[»]
4V5Nelectron microscopy7.60B91-37[»]
4V5PX-ray3.10B9/D91-37[»]
4V5QX-ray3.10B9/D91-37[»]
4V5RX-ray3.10B9/D91-37[»]
4V5SX-ray3.10B9/D91-37[»]
4V68electron microscopy6.40B92-36[»]
4V6AX-ray3.10B9/D91-37[»]
4V7JX-ray3.30A9/B91-37[»]
4V7KX-ray3.60A9/B91-37[»]
4V7LX-ray3.00B9/D91-37[»]
4V7MX-ray3.45B9/D91-37[»]
4V8GX-ray3.00B9/D91-37[»]
4V8HX-ray3.10B9/D91-37[»]
4V8IX-ray2.70B9/D91-37[»]
4V8JX-ray3.90B9/D91-37[»]
4V8NX-ray3.10B9/D91-37[»]
4V8OX-ray3.80B91-37[»]
4V8QX-ray3.10A91-37[»]
4V8UX-ray3.70B9/D91-37[»]
4V8XX-ray3.35B9/D91-37[»]
4V90X-ray2.95B91-37[»]
4V95X-ray3.20B9/D91-37[»]
4V97X-ray3.52B9/D91-37[»]
4V9HX-ray2.86B91-37[»]
4V9IX-ray3.30B9/D92-37[»]
4V9RX-ray3.00B9/D91-37[»]
4V9SX-ray3.10B9/D91-37[»]
4W2EX-ray2.9091-37[»]
4W2FX-ray2.40B9/D91-37[»]
4W2GX-ray2.55B9/D91-37[»]
4W2HX-ray2.70B9/D91-37[»]
4W2IX-ray2.70B9/D91-37[»]
4W4GX-ray3.30R9/Y91-37[»]
4WPOX-ray2.80A9/C91-37[»]
4WQFX-ray2.80A9/C91-37[»]
4WQUX-ray2.80A9/C91-37[»]
4WQYX-ray2.80A9/C91-37[»]
4WT8X-ray3.40C0/D02-37[»]
4Y4OX-ray2.3019/291-37[»]
4Y4PX-ray2.5019/291-37[»]
4YPBX-ray3.40R9/Y91-37[»]
4YZVX-ray3.10R9/Y91-37[»]
4Z3SX-ray2.6519/291-37[»]
4Z8CX-ray2.9019/291-37[»]
4ZERX-ray3.1019/291-37[»]
4ZSNX-ray3.60R9/Y91-37[»]
5A9Zelectron microscopy4.70Af1-37[»]
5AA0electron microscopy5.00Af1-37[»]
5CZPX-ray3.30R9/Y91-37[»]
5DFEX-ray3.10R9/Y91-37[»]
5DOXX-ray3.1019/291-37[»]
5DOYX-ray2.6019/291-37[»]
5F8KX-ray2.8019/291-37[»]
5FDUX-ray2.9019/291-37[»]
5FDVX-ray2.8019/291-37[»]
5HAUX-ray3.0017/271-37[»]
5HCPX-ray2.8919/291-37[»]
5HCQX-ray2.8019/291-37[»]
5HCRX-ray2.8019/291-37[»]
5HD1X-ray2.7019/291-37[»]
5IMQelectron microscopy3.8011-37[»]
5IMRelectron microscopy-11-37[»]
5J30X-ray3.20R9/Y91-37[»]
5J3CX-ray3.04R9/Y91-37[»]
5J4BX-ray2.6019/291-37[»]
5J4CX-ray2.8019/291-37[»]
5J8BX-ray2.6091-37[»]
5OT7electron microscopy3.80e1-37[»]
5UQ7electron microscopy3.5091-37[»]
5UQ8electron microscopy3.2091-37[»]
5VP2X-ray2.8019/291-37[»]
5VPOX-ray3.34R9/Y91-37[»]
5VPPX-ray3.90R9/Y91-37[»]
5W4KX-ray2.7019/291-37[»]
5WISX-ray2.7019/291-37[»]
5WITX-ray2.6019/291-37[»]
5ZLUelectron microscopy3.60BB1-37[»]
6BUWX-ray3.50R9/Y91-37[»]
6BZ6X-ray3.18R9/Y91-37[»]
6BZ7X-ray3.68R9/Y91-37[»]
6BZ8X-ray3.74R9/Y91-37[»]
6C5LX-ray3.20B9/D91-37[»]
6CAEX-ray2.6019/291-37[»]
6CFJX-ray2.8019/291-37[»]
6CFKX-ray2.7019/291-37[»]
6CFLX-ray2.6019/291-37[»]
6CZRX-ray3.1419/291-37[»]
6FKRX-ray3.2019/291-37[»]
6GZQelectron microscopy3.28e12-37[»]
6GZXelectron microscopy4.57e1/e22-37[»]
6GZZelectron microscopy4.13e1/e22-37[»]
6ND5X-ray2.6019/291-37[»]
6ND6X-ray2.8519/291-37[»]
6NDKX-ray3.64R9/Y91-37[»]
6O97X-ray2.7519/291-37[»]
6OF1X-ray2.8019/291-37[»]
SMRiQ5SHR2
ModBaseiSearch...

Protein-protein interaction databases

STRINGi300852.55773050

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD71491; BAD71491; BAD71491
GeneIDi3167970
KEGGittj:TTHA1668
PATRICifig|300852.9.peg.1638

Phylogenomic databases

eggNOGiENOG41067V7 Bacteria
COG0257 LUCA
HOGENOMiHOG000111584
KOiK02919

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1674-MONOMER

Miscellaneous databases

EvolutionaryTraceiQ5SHR2

Family and domain databases

HAMAPiMF_00251 Ribosomal_L36, 1 hit
InterProiView protein in InterPro
IPR000473 Ribosomal_L36
IPR035977 Ribosomal_L36_sp
PANTHERiPTHR42888 PTHR42888, 1 hit
PfamiView protein in Pfam
PF00444 Ribosomal_L36, 1 hit
SUPFAMiSSF57840 SSF57840, 1 hit
TIGRFAMsiTIGR01022 rpmJ_bact, 1 hit
PROSITEiView protein in PROSITE
PS00828 RIBOSOMAL_L36, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL36_THET8
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5SHR2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: September 18, 2019
This is version 118 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
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