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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1680-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:TTHA1674
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001046162 – 6050S ribosomal protein L30Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA1674

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 8Combined sources5
Helixi17 – 26Combined sources10
Beta strandi34 – 37Combined sources4
Helixi41 – 49Combined sources9
Helixi51 – 53Combined sources3
Beta strandi54 – 58Combined sources5

3D structure databases

ProteinModelPortaliQ5SHQ6
SMRiQ5SHQ6
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHQ6

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL30 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410856V Bacteria
COG1841 LUCA
HOGENOMiHOG000039916
KOiK02907
OMAiIGGKQNQ

Family and domain databases

CDDicd01658 Ribosomal_L30, 1 hit
Gene3Di3.30.1390.20, 1 hit
HAMAPiMF_01371_B Ribosomal_L30_B, 1 hit
InterProiView protein in InterPro
IPR036919 L30_ferredoxin-like_sf
IPR005996 Ribosomal_L30_bac-type
IPR018038 Ribosomal_L30_CS
IPR016082 Ribosomal_L30_ferredoxin-like
PANTHERiPTHR15892 PTHR15892, 1 hit
PfamiView protein in Pfam
PF00327 Ribosomal_L30, 1 hit
PIRSFiPIRSF002211 Ribosomal_L30_bac-type, 1 hit
SUPFAMiSSF55129 SSF55129, 1 hit
TIGRFAMsiTIGR01308 rpmD_bact, 1 hit
PROSITEiView protein in PROSITE
PS00634 RIBOSOMAL_L30, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5SHQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV
60
AHLVRVEVVE
Length:60
Mass (Da):6,785
Last modified:January 23, 2007 - v3
Checksum:iCDC6675F81A8D327
GO

Mass spectrometryi

Molecular mass is 6655 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71497.1
RefSeqiWP_008633387.1, NC_006461.1
YP_144940.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71497; BAD71497; BAD71497
GeneIDi3169818
KEGGittj:TTHA1674
PATRICifig|300852.9.peg.1644

Similar proteinsi

Entry informationi

Entry nameiRL30_THET8
AccessioniPrimary (citable) accession number: Q5SHQ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: January 23, 2007
Last modified: June 20, 2018
This is version 118 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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