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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1696-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:TTHA1690
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001294271 – 9650S ribosomal protein L23Add BLAST96

Interactioni

Subunit structurei

Contacts protein L29, and trigger factor when it is bound to the ribosome (By similarity). Part of the 50S ribosomal subunit.By similarity

Protein-protein interaction databases

STRINGi300852.TTHA1690

Structurei

Secondary structure

196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni5 – 7Combined sources3
Helixi15 – 19Combined sources5
Turni20 – 24Combined sources5
Beta strandi25 – 30Combined sources6
Helixi36 – 47Combined sources12
Beta strandi51 – 59Combined sources9
Beta strandi63 – 66Combined sources4
Beta strandi69 – 72Combined sources4
Beta strandi76 – 83Combined sources8
Helixi90 – 93Combined sources4

3D structure databases

ProteinModelPortaliQ5SHP0
SMRiQ5SHP0
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5SHP0

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL23 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41080UE Bacteria
COG0089 LUCA
HOGENOMiHOG000231366
KOiK02892
OMAiTMNPPRR
PhylomeDBiQ5SHP0

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_B Ribosomal_L23_B, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit

Sequencei

Sequence statusi: Complete.

Q5SHP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK
60 70 80 90
VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI
Length:96
Mass (Da):10,737
Last modified:December 21, 2004 - v1
Checksum:i28ABA3C2D83A102A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti18Y → R AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 10737 Da from positions 1 - 96. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71513.1
RefSeqiWP_008633421.1, NC_006461.1
YP_144956.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71513; BAD71513; BAD71513
GeneIDi3168722
KEGGittj:TTHA1690
PATRICifig|300852.9.peg.1660

Similar proteinsi

Entry informationi

Entry nameiRL23_THET8
AccessioniPrimary (citable) accession number: Q5SHP0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: December 21, 2004
Last modified: June 20, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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