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Protein
Submitted name:

RNA-binding protein 39

Gene

RBM39

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein 39Imported
Gene namesi
Name:RBM39Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 20

Organism-specific databases

EuPathDBiHostDB:ENSG00000131051.21
HGNCiHGNC:15923 RBM39

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000131051

PTM / Processingi

Proteomic databases

MaxQBiQ5QP23
PeptideAtlasiQ5QP23
PRIDEiQ5QP23

Expressioni

Gene expression databases

BgeeiENSG00000131051 Expressed in 197 organ(s), highest expression level in intestine
ExpressionAtlasiQ5QP23 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliQ5QP23
SMRiQ5QP23
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini152 – 229RRMInterPro annotationAdd BLAST78

Phylogenomic databases

eggNOGiKOG0147 Eukaryota
ENOG410XP20 LUCA
GeneTreeiENSGT00930000150902
HOGENOMiHOG000236253
HOVERGENiHBG057646

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR006509 RBM39_SF
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
TIGRFAMsiTIGR01622 SF-CC1, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 14 potential isoforms that are computationally mapped.Show allAlign All

Q5QP23-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MADDIDIEAM LEAPYKKDEN KLSSANGHEE RSKKRKKSKS RSRSHERKRS
60 70 80 90 100
KSKERKRSRD RERKKSKSRE RKRSRSKERR RSRSRSRDRR FRGRYRSPYS
110 120 130 140 150
GPKFNSAIRG KIGLPHSIKL RRRSRSKSPF RKDKSPVREP IDNLTPEERD
160 170 180 190 200
ARTVFCMQLA ARIRPRDLEE FFSTVGKVRD VRMISDRNSR RSKGIAYVEF
210 220 230
VDVSSVPLAI GLTGQRVLGV PIIVQASQAE K
Length:231
Mass (Da):27,081
Last modified:January 4, 2005 - v1
Checksum:iA5ECD184D234D0BF
GO

Computationally mapped potential isoform sequencesi

There are 14 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q14498RBM39_HUMAN
RNA-binding protein 39
RBM39 HCC1, RNPC2
530Annotation score:
G3XAC6G3XAC6_HUMAN
RNA-binding protein 39
RBM39 RNPC2, hCG_38221
423Annotation score:
H0Y4X3H0Y4X3_HUMAN
RNA-binding protein 39
RBM39
336Annotation score:
A0A0U1RQH7A0A0U1RQH7_HUMAN
RNA-binding protein 39
RBM39
245Annotation score:
Q5QP22Q5QP22_HUMAN
RNA-binding protein 39
RBM39
193Annotation score:
A0A0U1RQW2A0A0U1RQW2_HUMAN
RNA-binding protein 39
RBM39
163Annotation score:
F2Z2Z5F2Z2Z5_HUMAN
RNA-binding protein 39
RBM39
47Annotation score:
A8MYG5A8MYG5_HUMAN
RNA-binding protein 39
RBM39
95Annotation score:
F8WF24F8WF24_HUMAN
RNA-binding protein 39
RBM39
39Annotation score:
H0Y6I9H0Y6I9_HUMAN
RNA-binding protein 39
RBM39
86Annotation score:
There are more potential isoformsShow all

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei231Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL357374 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000374038; ENSP00000363150; ENSG00000131051
UCSCiuc061wqm.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL357374 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliQ5QP23
SMRiQ5QP23
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiQ5QP23
PeptideAtlasiQ5QP23
PRIDEiQ5QP23

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000374038; ENSP00000363150; ENSG00000131051
UCSCiuc061wqm.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000131051.21
HGNCiHGNC:15923 RBM39
OpenTargetsiENSG00000131051
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0147 Eukaryota
ENOG410XP20 LUCA
GeneTreeiENSGT00930000150902
HOGENOMiHOG000236253
HOVERGENiHBG057646

Miscellaneous databases

ChiTaRSiRBM39 human

Gene expression databases

BgeeiENSG00000131051 Expressed in 197 organ(s), highest expression level in intestine
ExpressionAtlasiQ5QP23 baseline and differential

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR006509 RBM39_SF
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
TIGRFAMsiTIGR01622 SF-CC1, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ5QP23_HUMAN
AccessioniPrimary (citable) accession number: Q5QP23
Entry historyiIntegrated into UniProtKB/TrEMBL: January 4, 2005
Last sequence update: January 4, 2005
Last modified: November 7, 2018
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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