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UniProtKB - Q5NEC2 (Q5NEC2_FRATT)

Entry version 78 (02 Jun 2021)
Sequence version 1 (01 Feb 2005)
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Protein
Submitted name:

Uncharacterized protein

Gene

pdpD2

Organism
Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		FTUL177416:G1G1C-1548-MONOMER
FTUL177416:G1G1C-1981-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pdpD2Imported
Synonyms:pdpD1Imported
Ordered Locus Names:FTT_1360cImported, FTT_1715cImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFrancisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri177416 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Thiotrichales › Francisellaceae › Francisella ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001174 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...IntActi		Q5NEC2, 2 interactors

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		SPMMECQ

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q5NEC2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDQDINDLLY DTNDLKKEKV CGGFFDFIKA WFYNDVERHM FFEDEIIVAQ 
        60         70         80         90        100
KLKTMDVMAN TYALERKKYF EKFLKDSHKQ KGFFTRIKDR DFAFYKDPTR 
       110        120        130        140        150
VKLWSSITDT DVYSFFIKSS VNQVLGGGNI AQLTSLPKFK FNAIASVNNE 
       160        170        180        190        200
NISAAANLAA TGAKSFFGSS CINIWSNLPV FDSERGDVKS FIPLYLRISG 
       210        220        230        240        250
KASSALFNYN IDISASTNRL KFTESKCMEL LNNFKGNVNL RLVAAKSSRE 
       260        270        280        290        300
AKSFIYTPKF KEDSNKHLND LGFILNTQQG SYRYLVPEIR DGLDLIREYT 
       310        320        330        340        350
YPEIEQIYFG RSALSGYSKS NYDKQSLGIE KNGEGLMTLR VSSKDYENPL 
       360        370        380        390        400
IQVKTSVNVT SFDLLSGQIK GKILADDLIG FSDAKGAINK FRNEVDTIIK 
       410        420        430        440        450
NNISESFKSP FKIPNLSEFS DMEIRVRFGL YSKQSASKLR TIRISIPMTT 
       460        470        480        490        500
KMLDFNQTSG SYNTKSGMGY SMAQRHQLKE AIPYNEGLLE NSAQQDFDLV 
       510        520        530        540        550
KPTGNSTLGA VQDNLSNIYD KSSTFDSVIG SLRELYKLKG EDLTNIDSHD 
       560        570        580        590        600
ILNVLSQNSS LSGLSSSIAA DLNELNSKFK DITSINKKTS EAILSTNYQQ 
       610        620        630        640        650
YNPSFNKAKI FDNPDSFYVQ DTLINYSQTL KKEEFRDQMS TINIIEFGSD 
       660        670        680        690        700
GDLPILFNLC KMMTSESAKD GAKNFLSQKE NVNKTKEFFD ALENTTSVIS 
       710        720        730        740        750
PESNISYTSI NVLCSKNAGG VITENNKASS VSLGSTISLA DFNRMYSLDS 
       760        770        780        790        800
RVSVLGVSPL EELSSFSAKK NEYKITFEEY FTKLAIQRYM EVIMIDDEAD 
       810        820        830        840        850
FIKSFVLPMM ECQKKLLDNL VILNKDAKWK SSSSFKRAFS NRGSFSFTGW 
       860        870        880        890        900
LKERLPGFDF ELSQEYAYFT GLVINFAFEE DNSSSETVIK LCKIIKSLDR 
       910        920        930        940        950
LVRGFYFLLR RMVKNRNTKV GSHNVSESHI NMVKQILTSL CEPYQILTQK 
       960        970        980        990       1000
VSDNAELLSA LVNMLSFMDS LVEVQRLCAS ICIPTSAFFT LVNENKNLLK 
      1010       1020       1030       1040       1050
DICYTVEKSG VTGIVVESTF SYSPELFKEN QQDIKLNIKN TSVRVRDGKV 
      1060       1070       1080       1090       1100
KRVTSIDRNA NTEAILQSIY DNIIAFDEQD LERLFTGFRI LKQENSTNTN 
      1110       1120       1130       1140       1150
KAVFNIGLTY HPITNNAFVE FNKDQQSLLY SYNNLSKDAY VTKIKSIVDA 
      1160       1170       1180       1190 
KVALNLSFEH EEIRSSQGFS VLATVPARGY SIDDLNRKYR PMIWV
Length:1,195
Mass (Da):135,395
Last modified:February 1, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9A16A8605FF31E8E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AJ749949 Genomic DNA Translation: CAG45993.1
AJ749949 Genomic DNA Translation: CAG46348.1

NCBI Reference Sequences

More...RefSeqi		WP_003022155.1, NZ_CP010290.1
YP_170312.1, NC_006570.2
YP_170620.1, NC_006570.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAG45993; CAG45993; FTT_1360c
CAG46348; CAG46348; FTT_1715c

Database of genes from NCBI RefSeq genomes

More...GeneIDi		39482371

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ftu:FTT_1360c
ftu:FTT_1715c

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|177416.36.peg.1013

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ749949 Genomic DNA Translation: CAG45993.1
AJ749949 Genomic DNA Translation: CAG46348.1
RefSeqiWP_003022155.1, NZ_CP010290.1
YP_170312.1, NC_006570.2
YP_170620.1, NC_006570.2

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

IntActiQ5NEC2, 2 interactors

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		3191313

Genome annotation databases

EnsemblBacteriaiCAG45993; CAG45993; FTT_1360c
CAG46348; CAG46348; FTT_1715c
GeneIDi39482371
KEGGiftu:FTT_1360c
ftu:FTT_1715c
PATRICifig|177416.36.peg.1013

Phylogenomic databases

OMAiSPMMECQ

Enzyme and pathway databases

BioCyciFTUL177416:G1G1C-1548-MONOMER
FTUL177416:G1G1C-1981-MONOMER

Family and domain databases

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ5NEC2_FRATT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5NEC2
Secondary accession number(s): A0A0G2RP94
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 2005
Last sequence update: February 1, 2005
Last modified: June 2, 2021
This is version 78 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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