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Protein

Zinc finger CCCH domain-containing protein 6

Gene

Os01g0258700

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri59 – 87C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri108 – 136C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri153 – 181C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 335C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri353 – 381C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 6
Short name:
OsC3H6
Alternative name(s):
Zinc finger CCCH domain-containing protein ZFN-like 1
Gene namesi
Ordered Locus Names:Os01g0258700, LOC_Os01g15460
ORF Names:P0462H08.27-1, P0462H08.27-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139221 – 476Zinc finger CCCH domain-containing protein 6Add BLAST476

Proteomic databases

PaxDbiQ5NAW2

Expressioni

Gene expression databases

ExpressionAtlasiQ5NAW2 differential
GenevisibleiQ5NAW2 OS

Structurei

3D structure databases

ProteinModelPortaliQ5NAW2
SMRiQ5NAW2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi6 – 11Poly-Ala6
Compositional biasi34 – 50Poly-GlyAdd BLAST17

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri59 – 87C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri108 – 136C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri153 – 181C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 335C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri353 – 381C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IU2N Eukaryota
ENOG410Y25U LUCA
HOGENOMiHOG000237733
InParanoidiQ5NAW2
OMAiGDCKYGS
OrthoDBiEOG093608TY

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

Sequences (3+)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q5NAW2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGGDG
60 70 80 90 100
DAAGRLPERP GEEDCVYYLR TGACGFGDRC RYNHPRDRGG TEFGGGARNA
110 120 130 140 150
AALDYPERAG QPICEYYMKT GTCKFGTNCK YHHPKQDGAV LPVMLNNSGF
160 170 180 190 200
PIRLGEKECS YYMKTGQCKF GTTCKFHHPE FGGVPMTPGI YPPLQSPSIA
210 220 230 240 250
SPHPYASLAN WQMGRPPVVP GSYIPGSYTP MMLSSGMIPL QGWSPYPASV
260 270 280 290 300
NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ
310 320 330 340 350
EHGFPERPGQ PDCQYYMRTG DCKFGATCKY HHPRELSAPK SGYMVNSLCL
360 370 380 390 400
PLRPGAQPCA YYAQNGYCRY GVACKYDHPM GTLGYSPSAL PLSDMPIAPY
410 420 430 440 450
PIGFSIATLA PSSPSPDLRP EYISTKDQSV NQVTSPVAAS EPVGSILPKG
460 470
VFPADTMMRA QTNTTSGGSS SPGGGR
Length:476
Mass (Da):49,835
Last modified:April 26, 2005 - v2
Checksum:i46F41CB2DC3D6A52
GO
Isoform 2 (identifier: Q5NAW2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-29: Missing.

Note: May be due to intron retention. No experimental confirmation available.
Show »
Length:447
Mass (Da):47,260
Checksum:iC31C997ED8199815
GO
Isoform 3 (identifier: Q5NAW2-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-269: Missing.

Note: May be due to intron retention.
Show »
Length:207
Mass (Da):21,911
Checksum:i1D9AA0F7A12AB1BC
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B7F3Z8B7F3Z8_ORYSJ
Os01g0258700 protein
Os01g0258700 OSNPB_010258700
464Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti158E → K in AK111903 (PubMed:12869764).Curated1
Sequence conflicti386S → G in AK111727 (PubMed:12869764).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0135601 – 269Missing in isoform 3. 1 PublicationAdd BLAST269
Alternative sequenceiVSP_0135591 – 29Missing in isoform 2. 1 PublicationAdd BLAST29

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY573063 mRNA Translation: AAT35591.1
AY620413 mRNA Translation: AAT28673.1
AP002525 Genomic DNA Translation: BAD81401.1
AP002525 Genomic DNA Translation: BAD81402.1
AP008207 Genomic DNA Translation: BAF04551.1
AP014957 Genomic DNA Translation: BAS71408.1
AK111633 mRNA No translation available.
AK111727 mRNA No translation available.
AK111903 mRNA No translation available.
RefSeqiXP_015651248.1, XM_015795762.1 [Q5NAW2-1]
UniGeneiOs.9931

Genome annotation databases

EnsemblPlantsiOs01t0258700-01; Os01t0258700-01; Os01g0258700 [Q5NAW2-1]
GeneIDi4326236
GrameneiOs01t0258700-01; Os01t0258700-01; Os01g0258700 [Q5NAW2-1]
KEGGiosa:4326236

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY573063 mRNA Translation: AAT35591.1
AY620413 mRNA Translation: AAT28673.1
AP002525 Genomic DNA Translation: BAD81401.1
AP002525 Genomic DNA Translation: BAD81402.1
AP008207 Genomic DNA Translation: BAF04551.1
AP014957 Genomic DNA Translation: BAS71408.1
AK111633 mRNA No translation available.
AK111727 mRNA No translation available.
AK111903 mRNA No translation available.
RefSeqiXP_015651248.1, XM_015795762.1 [Q5NAW2-1]
UniGeneiOs.9931

3D structure databases

ProteinModelPortaliQ5NAW2
SMRiQ5NAW2
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ5NAW2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs01t0258700-01; Os01t0258700-01; Os01g0258700 [Q5NAW2-1]
GeneIDi4326236
GrameneiOs01t0258700-01; Os01t0258700-01; Os01g0258700 [Q5NAW2-1]
KEGGiosa:4326236

Phylogenomic databases

eggNOGiENOG410IU2N Eukaryota
ENOG410Y25U LUCA
HOGENOMiHOG000237733
InParanoidiQ5NAW2
OMAiGDCKYGS
OrthoDBiEOG093608TY

Gene expression databases

ExpressionAtlasiQ5NAW2 differential
GenevisibleiQ5NAW2 OS

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiC3H6_ORYSJ
AccessioniPrimary (citable) accession number: Q5NAW2
Secondary accession number(s): A0A0P0V0L0
, Q0JNX7, Q5NAW3, Q6IVC4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: April 26, 2005
Last modified: May 23, 2018
This is version 78 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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