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Protein

Probable transcription factor GLK2

Gene

GLK2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi242 – 267H-T-H motifPROSITE-ProRule annotationAdd BLAST26

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable transcription factor GLK2
Alternative name(s):
Golden2-like protein 2
Short name:
OsGLK2
Gene namesi
Name:GLK2
Ordered Locus Names:Os01g0239000, LOC_Os01g13740
ORF Names:OSJNBa0086P08.28-1, OSJNBa0086P08.28-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004083881 – 539Probable transcription factor GLK2Add BLAST539

Proteomic databases

PaxDbiQ5NAN5
PRIDEiQ5NAN5

Expressioni

Tissue specificityi

Expressed in leaves.1 Publication

Inductioni

By light.1 Publication

Gene expression databases

ExpressionAtlasiQ5NAN5 differential
GenevisibleiQ5NAN5 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g13740.1

Structurei

3D structure databases

ProteinModelPortaliQ5NAN5
SMRiQ5NAN5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini212 – 271HTH myb-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG410IH7K Eukaryota
ENOG4111SK7 LUCA
HOGENOMiHOG000237698
InParanoidiQ5NAN5
OMAiKRQMYTA
OrthoDBiEOG09360HCC

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q5NAN5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL
60 70 80 90 100
LEYIDFSCCD VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA
110 120 130 140 150
PGPGEPAAAA GAKEDVKEDG AAAAAAAAAA DYDGSPPPPR GKKKKDDEER
160 170 180 190 200
SSSLPEEKDA KNGGGDEVLS AVTTEDSSAG AAKSCSPSAE GHSKRKPSSS
210 220 230 240 250
SSSAAAGKNS HGKRKVKVDW TPELHRRFVQ AVEQLGIDKA VPSRILELMG
260 270 280 290 300
IECLTRHNIA SHLQKYRSHR KHLMAREAEA ASWTQKRQMY TAAAAAAAVA
310 320 330 340 350
AGGGPRKDAA AATAAVAPWV MPTIGFPPPH AAAMVPPPPH PPPFCRPPLH
360 370 380 390 400
VWGHPTAGVE PTTAAAPPPP SPHAQPPLLP VWPRHLAPPP PPLPAAWAHG
410 420 430 440 450
HQPAPVDPAA YWQQQYNAAR KWGPQAVTPG TPCMPPPLPP AAMLQRFPVP
460 470 480 490 500
PVPGMVPHPM YRPIPPPSPP QGNKLAALQL QLDAHPSKES IDAAIGDVLV
510 520 530
KPWLPLPLGL KPPSLDSVMS ELHKQGIPKV PPAASGAAG
Length:539
Mass (Da):56,284
Last modified:February 1, 2005 - v1
Checksum:i06CC6781272155E2
GO
Isoform 2 (identifier: Q5NAN5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     219-226: DWTPELHR → YPYYQPHN
     227-539: Missing.

Note: Derived from EST data. No experimental confirmation available.
Show »
Length:226
Mass (Da):23,230
Checksum:i989033557B9E9D86
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_041080219 – 226DWTPELHR → YPYYQPHN in isoform 2. Curated8
Alternative sequenceiVSP_041081227 – 539Missing in isoform 2. CuratedAdd BLAST313

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002855 Genomic DNA Translation: BAD81484.1
AP002855 Genomic DNA Translation: BAD81485.1
AP008207 Genomic DNA Translation: BAF04456.1
AP014957 Genomic DNA Translation: BAS71255.1
AP014957 Genomic DNA Translation: BAS71256.1
AK121019 mRNA Translation: BAH00278.1
RefSeqiXP_015615905.1, XM_015760419.1 [Q5NAN5-1]
UniGeneiOs.1229

Genome annotation databases

EnsemblPlantsiOs01t0239000-01; Os01t0239000-01; Os01g0239000 [Q5NAN5-2]
Os01t0239000-02; Os01t0239000-02; Os01g0239000 [Q5NAN5-1]
GeneIDi4326363
GrameneiOs01t0239000-01; Os01t0239000-01; Os01g0239000 [Q5NAN5-2]
Os01t0239000-02; Os01t0239000-02; Os01g0239000 [Q5NAN5-1]
KEGGiosa:4326363

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002855 Genomic DNA Translation: BAD81484.1
AP002855 Genomic DNA Translation: BAD81485.1
AP008207 Genomic DNA Translation: BAF04456.1
AP014957 Genomic DNA Translation: BAS71255.1
AP014957 Genomic DNA Translation: BAS71256.1
AK121019 mRNA Translation: BAH00278.1
RefSeqiXP_015615905.1, XM_015760419.1 [Q5NAN5-1]
UniGeneiOs.1229

3D structure databases

ProteinModelPortaliQ5NAN5
SMRiQ5NAN5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g13740.1

Proteomic databases

PaxDbiQ5NAN5
PRIDEiQ5NAN5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs01t0239000-01; Os01t0239000-01; Os01g0239000 [Q5NAN5-2]
Os01t0239000-02; Os01t0239000-02; Os01g0239000 [Q5NAN5-1]
GeneIDi4326363
GrameneiOs01t0239000-01; Os01t0239000-01; Os01g0239000 [Q5NAN5-2]
Os01t0239000-02; Os01t0239000-02; Os01g0239000 [Q5NAN5-1]
KEGGiosa:4326363

Phylogenomic databases

eggNOGiENOG410IH7K Eukaryota
ENOG4111SK7 LUCA
HOGENOMiHOG000237698
InParanoidiQ5NAN5
OMAiKRQMYTA
OrthoDBiEOG09360HCC

Gene expression databases

ExpressionAtlasiQ5NAN5 differential
GenevisibleiQ5NAN5 OS

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiGLK2_ORYSJ
AccessioniPrimary (citable) accession number: Q5NAN5
Secondary accession number(s): A0A0P0V0C1, Q5NAN4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: February 1, 2005
Last modified: May 23, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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