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Entry version 101 (05 Jun 2019)
Sequence version 1 (15 Feb 2005)
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Protein
Submitted name:

Glycogen debranching enzyme, putative

Gene

CNJ03090

Organism
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (Filobasidiella neoformans)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GH13 Glycoside Hydrolase Family 13
GH133 Glycoside Hydrolase Family 133

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycogen debranching enzyme, putativeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:CNJ03090Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (Filobasidiella neoformans)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri214684 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaTremellomycetesTremellalesCryptococcaceaeCryptococcusCryptococcus neoformans species complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002149 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 10

Organism-specific databases

Eukaryotic Pathogen Database Resources

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EuPathDBi
FungiDB:CNJ03090

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q5KA48

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
5207.AAW45872

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini80 – 167hGDE_NInterPro annotationAdd BLAST88
Domaini198 – 634hDGE_amylaseInterPro annotationAdd BLAST437
Domaini795 – 1034hGDE_centralInterPro annotationAdd BLAST240
Domaini1108 – 1582GDE_CInterPro annotationAdd BLAST475

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 33DisorderedSequence analysisAdd BLAST33
Regioni882 – 902DisorderedSequence analysisAdd BLAST21

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3625 Eukaryota
COG3408 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q5KA48

KEGG Orthology (KO)

More...
KOi
K01196

Identification of Orthologs from Complete Genome Data

More...
OMAi
FTGSEEM

Database of Orthologous Groups

More...
OrthoDBi
33175at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd11327 AmyAc_Glg_debranch_2, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR010401 AGL/Gdb1
IPR032788 AGL_central
IPR029436 AGL_euk_N
IPR032792 AGL_glucanoTrfase
IPR032790 GDE_C
IPR017853 Glycoside_hydrolase_SF

The PANTHER Classification System

More...
PANTHERi
PTHR10569 PTHR10569, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06202 GDE_C, 1 hit
PF14701 hDGE_amylase, 1 hit
PF14702 hGDE_central, 1 hit
PF14699 hGDE_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48208 SSF48208, 1 hit
SSF51445 SSF51445, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q5KA48-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTILDSLKPS NIEIPKPKAV LQGDGKKTPK TPQDEAISFF SREGDGEPVQ
60 70 80 90 100
VWELSLEDDG GPSPEKSYIR LPPPFKPYVL RFTLQPGTDV TRNGVLKSDF
110 120 130 140 150
PMDGGAFKRD DWKERKLPSN LSKPIEVDLP ISAPGAFCYF IEYDSPDSTG
160 170 180 190 200
RVQGRKGYFN VDPIITLPAR TPFFPPDTPI TSGPLKDESS GAILPKDKQL
210 220 230 240 250
SLDGLIIISV LAKWMGKTTE WEPFFAEASR RGYNMLHWAP LQQKGMSGSP
260 270 280 290 300
YSIQNQLVFD IDLLKDSKAK DGGVKEVEEV LKFAKEKYGL GGVTDVVLNH
310 320 330 340 350
TAYDSPWLQE HPEAGYSPYN TPHLAPALEF EDALLGLTSR LSSVGLPTNL
360 370 380 390 400
KSESDLQALI PHIKSSIDDA KLWEYYIFDV QGSERAVADS LLNSKPEAPK
410 420 430 440 450
PWEGSSLQGK SLNELAEIVK SSDIITSYRA YSSRYCTSVP PAVAAGFIQA
460 470 480 490 500
AYPGDSAENQ ASRWGKILDV LNVDLYKECN EDIQAGIDGV VGRLRYTRLE
510 520 530 540 550
EGGPKLGELT EERAILERYF TRIPKNDITK KHPENALAVA NNGWMWAADP
560 570 580 590 600
LNNFAEYPSK AYLRRQVIVW DDCVKLRYGS QASDNPWLWQ HMISYAELLA
610 620 630 640 650
GMFDGFRLDN CHSTPLPLGK AIIDAGRRVN PNLYVMAELF TGSQEMDLKF
660 670 680 690 700
VRELGINSLV REAYNGNTVK NFADLLWRFG LGKPVGSMDV ACLTSSGEVH
710 720 730 740 750
LSLSSSKSST RPALVTPLQG SVPHAVFYDL THDNQSPRDK RTAEDALSTG
760 770 780 790 800
ALVTFCAAAL GSNKGFDDLY PKLLDLVTDN RKYEVISKEK EKSSGIGNVK
810 820 830 840 850
RVLNALHVEM MEGGYSEGYV HEDGEYLMIH RIHPVTHKGY MLVAHTAYPG
860 870 880 890 900
FKGRGWVKPI RLGRTSISYI FGASIKTRFE EWEDDPSTHR GIPSTLTEIG
910 920 930 940 950
PPEITKGIEN GEEYQEVVVP EDFAPGSIMV FATQMSDISG DLDAFCKEGA
960 970 980 990 1000
IDAMSQLDLV DLNVILHRAD GEEQDATGGD GTYTIPNYGA ITFCGLEGWM
1010 1020 1030 1040 1050
HPLREITKKN DLGHPLCQHL REGTWAFDYV VNRLNKQTFD LPRLEAPAKW
1060 1070 1080 1090 1100
FASRFDQIKA TAPSFMRPKY FSLVIHEAYK AARRAVVEQC SEFVSSGHSL
1110 1120 1130 1140 1150
THNLALCSVQ MYGLVKSASL DPGRAVPSLA AGLPHFAAGW ARCWGRDVFI
1160 1170 1180 1190 1200
SLRGLFLTTG NYPAARAHIL SFGSTLKHGL IPNLLDSTRN PRYNCRDGPW
1210 1220 1230 1240 1250
WFIQNIQDYT HMAPNGLTIL SDKVKRRFPA DDTWVAWDSP RAYEYESSVA
1260 1270 1280 1290 1300
ELIQEILQRH AEGIEFREYN AGPNLDMDMR DEGFNQKIWV DWETGIIFGG
1310 1320 1330 1340 1350
NRYNCGTWMD KMGSSEKAGN KGLPATPRDG APIEITGLLK SALTWLDKLS
1360 1370 1380 1390 1400
KGGKFPFKGV NASVKGKKRL VTYKEWSDLI QASFEKHYYV PSDPAEDDKY
1410 1420 1430 1440 1450
VINKGLVNRR GIYKDVFGTP KDREWSDYQL RCNFTLPMVV APELFTPSKA
1460 1470 1480 1490 1500
IGALSIADAV LRAPLGMKTL DPSDSQYRGD YDNSNDGTDQ AIAKGWNYHQ
1510 1520 1530 1540 1550
GPEWGFPLGW FLMAYLKFDR LAGEGKSNPT KTMHYISNIL RNLARHIESD
1560 1570 1580 1590
PWRGLPELTN SNGSFCYDSC NTQAWSASTI LDVLEEMHKI GKN
Length:1,593
Mass (Da):177,544
Last modified:February 15, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i465DCC1F1294A34E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AE017350 Genomic DNA Translation: AAW45872.1

NCBI Reference Sequences

More...
RefSeqi
XP_567389.1, XM_567389.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
AAW45872; AAW45872; CNJ03090

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
3254194

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cne:CNJ03090

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017350 Genomic DNA Translation: AAW45872.1
RefSeqiXP_567389.1, XM_567389.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi5207.AAW45872

Protein family/group databases

CAZyiGH13 Glycoside Hydrolase Family 13
GH133 Glycoside Hydrolase Family 133

Proteomic databases

PaxDbiQ5KA48

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiAAW45872; AAW45872; CNJ03090
GeneIDi3254194
KEGGicne:CNJ03090

Organism-specific databases

EuPathDBiFungiDB:CNJ03090

Phylogenomic databases

eggNOGiKOG3625 Eukaryota
COG3408 LUCA
InParanoidiQ5KA48
KOiK01196
OMAiFTGSEEM
OrthoDBi33175at2759

Family and domain databases

CDDicd11327 AmyAc_Glg_debranch_2, 1 hit
InterProiView protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR010401 AGL/Gdb1
IPR032788 AGL_central
IPR029436 AGL_euk_N
IPR032792 AGL_glucanoTrfase
IPR032790 GDE_C
IPR017853 Glycoside_hydrolase_SF
PANTHERiPTHR10569 PTHR10569, 1 hit
PfamiView protein in Pfam
PF06202 GDE_C, 1 hit
PF14701 hDGE_amylase, 1 hit
PF14702 hGDE_central, 1 hit
PF14699 hGDE_N, 1 hit
SUPFAMiSSF48208 SSF48208, 1 hit
SSF51445 SSF51445, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ5KA48_CRYNJ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q5KA48
Secondary accession number(s): Q55LE0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: June 5, 2019
This is version 101 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
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