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Protein
Submitted name:

PHD finger protein 20

Gene

PHF20

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PHD finger protein 20Imported
Gene namesi
Name:PHF20Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 20

Organism-specific databases

EuPathDBiHostDB:ENSG00000025293.15
HGNCiHGNC:16098 PHF20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000025293

PTM / Processingi

Proteomic databases

MaxQBiQ5JWZ0
PeptideAtlasiQ5JWZ0
PRIDEiQ5JWZ0

Expressioni

Gene expression databases

BgeeiENSG00000025293 Expressed in 238 organ(s), highest expression level in endothelial cell
ExpressionAtlasiQ5JWZ0 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliQ5JWZ0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini452 – 482C2H2-typeInterPro annotationAdd BLAST31

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IMXB Eukaryota
ENOG410XX7Z LUCA
GeneTreeiENSGT00390000006451
HOGENOMiHOG000231997
HOVERGENiHBG053586

Family and domain databases

InterProiView protein in InterPro
IPR022255 DUF3776
IPR037915 PHF20
IPR002999 Tudor
IPR013087 Znf_C2H2_type
PANTHERiPTHR15856:SF27 PTHR15856:SF27, 1 hit
PfamiView protein in Pfam
PF12618 DUF3776, 1 hit
SMARTiView protein in SMART
SM00333 TUDOR, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 1 hit
PS50157 ZINC_FINGER_C2H2_2, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

Q5JWZ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTKHPPNRRG ISFEVGAQLE ARDRLKNWYP AHIEDIDYEE GKVLIHFKRW
60 70 80 90 100
NHRYDEWFCW DSPYLRPLEK IQLRKEGLHE EDGSSEFQIN EQVLACWSDC
110 120 130 140 150
RFYPAKVTAV NKDGTYTVKF YDGVVQTVKH IHVKAFSKDQ NIVGNARPKE
160 170 180 190 200
TDHKSLSSSP DKREKFKEQR KATVNVKKDK EDKPLKTEKR PKQPDKEGKL
210 220 230 240 250
ICSEKGKVSE KSLPKNEKED KENISENDRE YSGDAQVDKK PENDIVKSPQ
260 270 280 290 300
ENLREPKRKR GRPPSIAPTA VDSNSQTLQP ITLELRRRKI SKGCEVPLKR
310 320 330 340 350
PRLDKNSSQE KSKNYSENTD KDLSRRRSSR LSTNGTHEIL DPDLVVSDLV
360 370 380 390 400
DTDPLQDTLS STKESEEGQL KSALEAGQVS SALTCHSFGD GSGAAGLELN
410 420 430 440 450
CPSMGENTMK TEPTSPLVEL QEISTVEVTN TFKKTDDFGS SNAPAVDLDH
460 470 480 490 500
KFRCKVVDCL KFFRKAKLLH YHMKYFHGME KSLEPEESPG KRHVQTRGPS
510 520 530 540
ASDKPSQETL TRKRVSASSP TTKDKEKNKE KKFKEFVRVK PKK
Length:543
Mass (Da):62,052
Last modified:May 10, 2005 - v1
Checksum:iF9419375636C7EAA
GO

Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9BVI0PHF20_HUMAN
PHD finger protein 20
PHF20 C20orf104, GLEA2, HCA58, NZF, TZP
1,012Annotation score:
Q5JXL1Q5JXL1_HUMAN
PHD finger protein 20
PHF20
549Annotation score:
F8WCQ1F8WCQ1_HUMAN
PHD finger protein 20
PHF20
103Annotation score:
B0QYY0B0QYY0_HUMAN
PHD finger protein 20
PHF20
154Annotation score:
B0QZ19B0QZ19_HUMAN
PHD finger protein 20
PHF20
64Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei543Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL078461 Genomic DNA No translation available.
AL109965 Genomic DNA No translation available.
AL356422 Genomic DNA No translation available.
AL357374 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000339089; ENSP00000341900; ENSG00000025293
UCSCiuc061wrj.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL078461 Genomic DNA No translation available.
AL109965 Genomic DNA No translation available.
AL356422 Genomic DNA No translation available.
AL357374 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliQ5JWZ0
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiQ5JWZ0
PeptideAtlasiQ5JWZ0
PRIDEiQ5JWZ0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000339089; ENSP00000341900; ENSG00000025293
UCSCiuc061wrj.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000025293.15
HGNCiHGNC:16098 PHF20
OpenTargetsiENSG00000025293
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IMXB Eukaryota
ENOG410XX7Z LUCA
GeneTreeiENSGT00390000006451
HOGENOMiHOG000231997
HOVERGENiHBG053586

Miscellaneous databases

ChiTaRSiPHF20 human

Gene expression databases

BgeeiENSG00000025293 Expressed in 238 organ(s), highest expression level in endothelial cell
ExpressionAtlasiQ5JWZ0 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR022255 DUF3776
IPR037915 PHF20
IPR002999 Tudor
IPR013087 Znf_C2H2_type
PANTHERiPTHR15856:SF27 PTHR15856:SF27, 1 hit
PfamiView protein in Pfam
PF12618 DUF3776, 1 hit
SMARTiView protein in SMART
SM00333 TUDOR, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 1 hit
PS50157 ZINC_FINGER_C2H2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ5JWZ0_HUMAN
AccessioniPrimary (citable) accession number: Q5JWZ0
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: September 12, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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