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UniProtKB - Q5JQD7 (YSL12_ORYSJ)
Protein
Probable metal-nicotianamine transporter YSL12
Gene
YSL12
Organism
Oryza sativa subsp. japonica (Rice)
Status
Functioni
May be involved in the transport of nicotianamine-chelated metals.
By similarityGO - Molecular functioni
- oligopeptide transmembrane transporter activity Source: InterPro
Keywordsi
Biological process | Transport |
Names & Taxonomyi
Protein namesi | Recommended name: Probable metal-nicotianamine transporter YSL12Alternative name(s): Protein YELLOW STRIPE LIKE 12 Short name: OsYSL12 |
Gene namesi | Name:YSL12 Ordered Locus Names:Os04g0524600, LOC_Os04g44320 ORF Names:OSJNBb0065J09.17 |
Organismi | Oryza sativa subsp. japonica (Rice) |
Taxonomic identifieri | 39947 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa |
Proteomesi |
|
Subcellular locationi
Other locations
- Membrane Curated; Multi-pass membrane protein Curated
Other locations
- integral component of membrane Source: UniProtKB-KW
- membrane Source: GO_Central
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 76 – 96 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 99 – 119 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 144 – 164 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 186 – 206 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 248 – 268 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 306 – 326 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 351 – 371 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 422 – 442 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 450 – 470 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 482 – 502 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 536 – 556 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 593 – 613 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 636 – 656 | HelicalSequence analysisAdd BLAST | 21 | |
Transmembranei | 671 – 691 | HelicalSequence analysisAdd BLAST | 21 |
Keywords - Cellular componenti
MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000363875 | 1 – 717 | Probable metal-nicotianamine transporter YSL12Add BLAST | 717 |
Proteomic databases
PaxDbi | Q5JQD7 |
Expressioni
Tissue specificityi
Expressed in root cortex and stele.1 Publication
Gene expression databases
Genevisiblei | Q5JQD7, OS |
Structurei
3D structure databases
AlphaFoldDBi | Q5JQD7 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 56 | DisorderedSequence analysisAdd BLAST | 56 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 17 – 32 | Basic and acidic residuesSequence analysisAdd BLAST | 16 |
Sequence similaritiesi
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | ENOG502QQ2H, Eukaryota |
InParanoidi | Q5JQD7 |
OMAi | FGMSDIV |
OrthoDBi | 525938at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR004813, OPT IPR045035, YSL-like |
PANTHERi | PTHR31645, PTHR31645, 1 hit |
Pfami | View protein in Pfam PF03169, OPT, 1 hit |
TIGRFAMsi | TIGR00728, OPT_sfam, 1 hit |
s (2)i Sequence
Sequence statusi: Complete.
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketIsoform 1 (identifier: Q5JQD7-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MASHANASGG GGDEEMVEAS TLRHRHGAGK DANGVGTERQ LAAAAAEGEE
60 70 80 90 100
EGPSSVERAF VDRAVPSWRE QLTVRAFVVS FFLSIMFSII VMKLNLTTGI
110 120 130 140 150
IPSLNVSAGL LGFFFVRLWT AAIERVGLLR QPFTRQENTV IQTCVVAAYG
160 170 180 190 200
IAFSGGFGTY LFGMSETIAK QATEANNAQN VKNPHIGWMI GFLFLVSFIG
210 220 230 240 250
LLALVPLRKI MIVDYKLTYP SGTATAYLIN GFHTPEGAKL AKKQVKELGK
260 270 280 290 300
FFLFSFVWGF FQWFYTAGDG CGFQSFPTLG LQAYKNRFYF DFSPTYVGVG
310 320 330 340 350
MICPHIVNVS VLLGGILSWG IMWPLIRNKK GSWYAASLSE TSLHGLQGYR
360 370 380 390 400
VFISIALILG DGLYNFVKVL IRTTAGFVVM MKKNSTLPVS NNGSPMVATE
410 420 430 440 450
AISFDDERRT ELFLKDQIPK TVAFGGYVAV AAVSIGTLPQ IFPQLKWYYI
460 470 480 490 500
LVAYVFAPVL AFCNAYGAGL TDWSLASTYG KLAIFIFGAW AGASNGGVLV
510 520 530 540 550
GLAACGVMMS IVSTASDLMQ DFKTGYLTLA SPRSMFVSQV IGTAMGCVIA
560 570 580 590 600
PCVFWLFYKA FADIGVSGTE YPAPYAIVYR NMAILGVDGF SSLPKHCLTL
610 620 630 640 650
CYIFFAAAIA INLARDLAPS KVARFIPLPM AMAIPFYIGS YFAIDMFIGT
660 670 680 690 700
VILFVWEMVN KAKAEAFAPA VASGLICGDG IWTLPQSILA LAKVKPPICM
710
KFLSRSVNAQ VDGFLGN
Sequence cautioni
The sequence BAE91892 differs from that shown. Reason: Frameshift.Curated
The sequence CAI44637 differs from that shown. Reason: Erroneous gene model prediction.Curated
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 251 | F → L in AK069437 (PubMed:12869764).Curated | 1 | |
Sequence conflicti | 361 | D → N in BAE91892 (PubMed:15255870).Curated | 1 | |
Sequence conflicti | 373 | T → K in BAE91892 (PubMed:15255870).Curated | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_036329 | 8 – 148 | Missing in isoform 2. 1 PublicationAdd BLAST | 141 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB190922 mRNA Translation: BAE91892.1 Frameshift. AL663010 Genomic DNA Translation: CAI44637.1 Sequence problems. AP008210 Genomic DNA Translation: BAF15265.1 AP014960 Genomic DNA Translation: BAS90151.1 AK069437 mRNA No translation available. |
RefSeqi | XP_015635779.1, XM_015780293.1 [Q5JQD7-1] |
Genome annotation databases
EnsemblPlantsi | Os04t0524600-01; Os04t0524600-01; Os04g0524600 [Q5JQD7-2] |
GeneIDi | 4336442 |
Gramenei | Os04t0524600-01; Os04t0524600-01; Os04g0524600 [Q5JQD7-2] |
KEGGi | osa:4336442 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB190922 mRNA Translation: BAE91892.1 Frameshift. AL663010 Genomic DNA Translation: CAI44637.1 Sequence problems. AP008210 Genomic DNA Translation: BAF15265.1 AP014960 Genomic DNA Translation: BAS90151.1 AK069437 mRNA No translation available. |
RefSeqi | XP_015635779.1, XM_015780293.1 [Q5JQD7-1] |
3D structure databases
AlphaFoldDBi | Q5JQD7 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 4530.OS04T0524600-01 |
Proteomic databases
PaxDbi | Q5JQD7 |
Genome annotation databases
EnsemblPlantsi | Os04t0524600-01; Os04t0524600-01; Os04g0524600 [Q5JQD7-2] |
GeneIDi | 4336442 |
Gramenei | Os04t0524600-01; Os04t0524600-01; Os04g0524600 [Q5JQD7-2] |
KEGGi | osa:4336442 |
Phylogenomic databases
eggNOGi | ENOG502QQ2H, Eukaryota |
InParanoidi | Q5JQD7 |
OMAi | FGMSDIV |
OrthoDBi | 525938at2759 |
Gene expression databases
Genevisiblei | Q5JQD7, OS |
Family and domain databases
InterProi | View protein in InterPro IPR004813, OPT IPR045035, YSL-like |
PANTHERi | PTHR31645, PTHR31645, 1 hit |
Pfami | View protein in Pfam PF03169, OPT, 1 hit |
TIGRFAMsi | TIGR00728, OPT_sfam, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | YSL12_ORYSJ | |
Accessioni | Q5JQD7Primary (citable) accession number: Q5JQD7 Secondary accession number(s): Q0JBM2, Q25CH4 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 10, 2009 |
Last sequence update: | February 10, 2009 | |
Last modified: | May 25, 2022 | |
This is version 78 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Oryza sativa (rice)
Index of Oryza sativa entries and their corresponding gene designations - SIMILARITY comments
Index of protein domains and families