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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTKOD69014:G1G2A-1504-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:TK1501
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618501 – 14250S ribosomal protein L13Add BLAST142

Proteomic databases

PRIDEiQ5JJF6

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi69014.TK1501

Structurei

3D structure databases

ProteinModelPortaliQ5JJF6
SMRiQ5JJF6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242 Archaea
COG0102 LUCA
HOGENOMiHOG000225287
InParanoidiQ5JJF6
KOiK02871
OMAiYHNFLHK
OrthoDBiPOG093Z0DQ4

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q5JJF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIINAEGLI LGRLASKVAK MLLEGEEVVI VNAEKAIITG NREDIFAKYK
60 70 80 90 100
QRTELRTRTN PRRGPFYPKR SDEIVRRTVR GMLPWKTDRG RKAFKRLKVY
110 120 130 140
VGVPKEFEGK EFETISEAHM SRLATPKYVT VGEVAKFLGG KF
Length:142
Mass (Da):16,284
Last modified:February 15, 2005 - v1
Checksum:iC58B39550CD1CD48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA Translation: BAD85690.1
RefSeqiWP_011250452.1, NC_006624.1

Genome annotation databases

EnsemblBacteriaiBAD85690; BAD85690; TK1501
GeneIDi3234826
KEGGitko:TK1501
PATRICifig|69014.16.peg.1461

Similar proteinsi

Entry informationi

Entry nameiRL13_THEKO
AccessioniPrimary (citable) accession number: Q5JJF6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: February 15, 2005
Last modified: May 23, 2018
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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