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Protein

Pentatricopeptide repeat-containing protein At3g18110, chloroplastic

Gene

EMB1270

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play a role in embryogenesis.1 Publication

GO - Biological processi

  • embryo development ending in seed dormancy Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Alternative name(s):
Protein EMBRYO DEFECTIVE 1270
Gene namesi
Name:EMB1270
Ordered Locus Names:At3g18110
ORF Names:MRC8.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G18110
TAIRilocus:2092712 AT3G18110

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 44ChloroplastSequence analysisAdd BLAST44
ChainiPRO_000035610045 – 1440Pentatricopeptide repeat-containing protein At3g18110, chloroplasticAdd BLAST1396

Proteomic databases

PaxDbiQ5G1S8
PRIDEiQ5G1S8

Expressioni

Gene expression databases

ExpressionAtlasiQ5G1S8 baseline and differential
GenevisibleiQ5G1S8 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G18110.1

Structurei

3D structure databases

ProteinModelPortaliQ5G1S8
SMRiQ5G1S8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati224 – 258PPR 1Add BLAST35
Repeati259 – 295PPR 2Add BLAST37
Repeati296 – 330PPR 3Add BLAST35
Repeati331 – 365PPR 4Add BLAST35
Repeati366 – 400PPR 5Add BLAST35
Repeati401 – 431PPR 6Add BLAST31
Repeati437 – 471PPR 7Add BLAST35
Repeati472 – 506PPR 8Add BLAST35
Repeati507 – 541PPR 9Add BLAST35
Repeati542 – 572PPR 10Add BLAST31
Repeati608 – 638PPR 11Add BLAST31
Repeati643 – 678PPR 12Add BLAST36
Repeati680 – 714PPR 13Add BLAST35
Repeati715 – 749PPR 14Add BLAST35
Repeati751 – 785PPR 15Add BLAST35
Repeati786 – 820PPR 16Add BLAST35
Repeati821 – 855PPR 17Add BLAST35
Repeati856 – 890PPR 18Add BLAST35
Repeati891 – 925PPR 19Add BLAST35
Repeati926 – 960PPR 20Add BLAST35
Repeati961 – 995PPR 21Add BLAST35
Repeati996 – 1030PPR 22Add BLAST35
Repeati1031 – 1065PPR 23Add BLAST35
Repeati1066 – 1100PPR 24Add BLAST35
Repeati1101 – 1135PPR 25Add BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi1417 – 1422Poly-Lys6

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000176424
InParanoidiQ5G1S8
OMAiDFCFVVK
OrthoDBiEOG093600AH
PhylomeDBiQ5G1S8

Family and domain databases

Gene3Di1.25.40.10, 8 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR033443 PPR_long
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 6 hits
PF13041 PPR_2, 4 hits
PF13812 PPR_3, 1 hit
PF17177 PPR_long, 1 hit
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 15 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 24 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5G1S8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR
60 70 80 90 100
WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
110 120 130 140 150
AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR
160 170 180 190 200
LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
210 220 230 240 250
LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA
260 270 280 290 300
MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
310 320 330 340 350
NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE
360 370 380 390 400
AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
410 420 430 440 450
DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK
460 470 480 490 500
ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
510 520 530 540 550
RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI
560 570 580 590 600
LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
610 620 630 640 650
ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL
660 670 680 690 700
IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
710 720 730 740 750
SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA
760 770 780 790 800
CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
810 820 830 840 850
GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD
860 870 880 890 900
MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
910 920 930 940 950
LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY
960 970 980 990 1000
QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1010 1020 1030 1040 1050
KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK
1060 1070 1080 1090 1100
AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1110 1120 1130 1140 1150
TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS
1160 1170 1180 1190 1200
KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1210 1220 1230 1240 1250
ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF
1260 1270 1280 1290 1300
RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1310 1320 1330 1340 1350
TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS
1360 1370 1380 1390 1400
LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1410 1420 1430 1440
ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Length:1,440
Mass (Da):162,337
Last modified:February 8, 2011 - v2
Checksum:i364887F23EF8B9BF
GO

Sequence cautioni

The sequence AAW62966 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY864351 Genomic DNA Translation: AAW62966.1 Sequence problems.
FJ375310 mRNA Translation: ACJ11249.1
AB020749 Genomic DNA Translation: BAB02023.1
CP002686 Genomic DNA Translation: AEE76049.1
RefSeqiNP_188439.2, NM_112693.4
UniGeneiAt.38608

Genome annotation databases

EnsemblPlantsiAT3G18110.1; AT3G18110.1; AT3G18110
GeneIDi821336
GrameneiAT3G18110.1; AT3G18110.1; AT3G18110
KEGGiath:AT3G18110

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY864351 Genomic DNA Translation: AAW62966.1 Sequence problems.
FJ375310 mRNA Translation: ACJ11249.1
AB020749 Genomic DNA Translation: BAB02023.1
CP002686 Genomic DNA Translation: AEE76049.1
RefSeqiNP_188439.2, NM_112693.4
UniGeneiAt.38608

3D structure databases

ProteinModelPortaliQ5G1S8
SMRiQ5G1S8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G18110.1

Proteomic databases

PaxDbiQ5G1S8
PRIDEiQ5G1S8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G18110.1; AT3G18110.1; AT3G18110
GeneIDi821336
GrameneiAT3G18110.1; AT3G18110.1; AT3G18110
KEGGiath:AT3G18110

Organism-specific databases

AraportiAT3G18110
TAIRilocus:2092712 AT3G18110

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000176424
InParanoidiQ5G1S8
OMAiDFCFVVK
OrthoDBiEOG093600AH
PhylomeDBiQ5G1S8

Miscellaneous databases

PROiPR:Q5G1S8

Gene expression databases

ExpressionAtlasiQ5G1S8 baseline and differential
GenevisibleiQ5G1S8 AT

Family and domain databases

Gene3Di1.25.40.10, 8 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR033443 PPR_long
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 6 hits
PF13041 PPR_2, 4 hits
PF13812 PPR_3, 1 hit
PF17177 PPR_long, 1 hit
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 15 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 24 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP241_ARATH
AccessioniPrimary (citable) accession number: Q5G1S8
Secondary accession number(s): B6VCZ6, Q9LV30
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: February 8, 2011
Last modified: November 7, 2018
This is version 90 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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